Literature DB >> 23325770

Glycosaminoglycan glycomics using mass spectrometry.

Joseph Zaia1.   

Abstract

The fact that sulfated glycosaminoglycans (GAGs) are necessary for the functioning of all animal physiological systems drives the need to understand their biology. This understanding is limited, however, by the heterogeneous nature of GAG chains and their dynamic spatial and temporal expression patterns. GAGs have a regulated structure overlaid by heterogeneity but lack the detail necessary to build structure/function relationships. In order to provide this information, we need glycomics platforms that are sensitive, robust, high throughput, and information rich. This review summarizes progress on mass-spectrometry-based GAG glycomics methods. The areas covered include disaccharide analysis, oligosaccharide profiling, and tandem mass spectrometric sequencing.

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Year:  2013        PMID: 23325770      PMCID: PMC3617335          DOI: 10.1074/mcp.R112.026294

Source DB:  PubMed          Journal:  Mol Cell Proteomics        ISSN: 1535-9476            Impact factor:   5.911


  62 in total

1.  Microanalysis of glycosaminoglycan-derived oligosaccharides labeled with a fluorophore 2-aminobenzamide by high-performance liquid chromatography: application to disaccharide composition analysis and exosequencing of oligosaccharides.

Authors:  A Kinoshita; K Sugahara
Journal:  Anal Biochem       Date:  1999-05-01       Impact factor: 3.365

2.  Distinguishing glucuronic from iduronic acid in glycosaminoglycan tetrasaccharides by using electron detachment dissociation.

Authors:  Jeremy J Wolff; Lianli Chi; Robert J Linhardt; I Jonathan Amster
Journal:  Anal Chem       Date:  2007-01-25       Impact factor: 6.986

Review 3.  The molecular diversity of glycosaminoglycans shapes animal development.

Authors:  Hannes E Bülow; Oliver Hobert
Journal:  Annu Rev Cell Dev Biol       Date:  2006       Impact factor: 13.827

4.  Fluorophore-assisted carbohydrate electrophoresis (FACE) of glycosaminoglycans.

Authors:  A Calabro; R Midura; A Wang; L West; A Plaas; V C Hascall
Journal:  Osteoarthritis Cartilage       Date:  2001       Impact factor: 6.576

5.  Sequencing complex polysaccharides.

Authors:  G Venkataraman; Z Shriver; R Raman; R Sasisekharan
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

6.  Mass spectrometric molecular-weight determination of highly acidic compounds of biological significance via their complexes with basic polypeptides.

Authors:  P Juhasz; K Biemann
Journal:  Proc Natl Acad Sci U S A       Date:  1994-05-10       Impact factor: 11.205

7.  Evolutionary differences in glycosaminoglycan fine structure detected by quantitative glycan reductive isotope labeling.

Authors:  Roger Lawrence; Sara K Olson; Robert E Steele; Lianchun Wang; Rahul Warrior; Richard D Cummings; Jeffrey D Esko
Journal:  J Biol Chem       Date:  2008-09-24       Impact factor: 5.157

8.  Top-down approach for the direct characterization of low molecular weight heparins using LC-FT-MS.

Authors:  Lingyun Li; Fuming Zhang; Joseph Zaia; Robert J Linhardt
Journal:  Anal Chem       Date:  2012-09-26       Impact factor: 6.986

9.  Electron detachment dissociation of dermatan sulfate oligosaccharides.

Authors:  Jeremy J Wolff; Tatiana N Laremore; Alexander M Busch; Robert J Linhardt; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2007-10-22       Impact factor: 3.109

10.  HSulf-2, an extracellular endoglucosamine-6-sulfatase, selectively mobilizes heparin-bound growth factors and chemokines: effects on VEGF, FGF-1, and SDF-1.

Authors:  Kenji Uchimura; Megumi Morimoto-Tomita; Annette Bistrup; Jessica Li; Malcolm Lyon; John Gallagher; Zena Werb; Steven D Rosen
Journal:  BMC Biochem       Date:  2006-01-17       Impact factor: 4.059

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  32 in total

1.  Positive Mode LC-MS/MS Analysis of Chondroitin Sulfate Modified Glycopeptides Derived from Light and Heavy Chains of The Human Inter-α-Trypsin Inhibitor Complex.

Authors:  Alejandro Gomez Toledo; Jonas Nilsson; Fredrik Noborn; Carina Sihlbom; Göran Larson
Journal:  Mol Cell Proteomics       Date:  2015-09-25       Impact factor: 5.911

2.  Analysis of Sulfate Patterns in Glycosaminoglycan Oligosaccharides by MSn Coupled to Infrared Ion Spectroscopy: the Case of GalNAc4S and GalNAc6S.

Authors:  G Renois-Predelus; B Schindler; I Compagnon
Journal:  J Am Soc Mass Spectrom       Date:  2018-04-26       Impact factor: 3.109

Review 3.  Glycosaminoglycanomics: where we are.

Authors:  Sylvie Ricard-Blum; Frédérique Lisacek
Journal:  Glycoconj J       Date:  2016-11-30       Impact factor: 2.916

4.  Heparan sulfate differences in rheumatoid arthritis versus healthy sera.

Authors:  Jenny K Sabol; Wei Wei; Marcos López-Hoyos; Youjin Seo; Armann Andaya; Julie A Leary
Journal:  Matrix Biol       Date:  2014-09-11       Impact factor: 11.583

5.  Online Capillary Zone Electrophoresis Negative Electron Transfer Dissociation Tandem Mass Spectrometry of Glycosaminoglycan Mixtures.

Authors:  Morgan Stickney; Patience Sanderson; Franklin E Leach; Fuming Zhang; Robert J Linhardt; I Jonathan Amster
Journal:  Int J Mass Spectrom       Date:  2019-08-17       Impact factor: 1.986

6.  Structural Characterization of Sulfated Glycosaminoglycans Using Charge-Transfer Dissociation.

Authors:  Lauren E Pepi; Zachary J Sasiene; Praneeth M Mendis; Glen P Jackson; I Jonathan Amster
Journal:  J Am Soc Mass Spectrom       Date:  2020-09-03       Impact factor: 3.109

7.  Platelet Factor 4 Interactions with Short Heparin Oligomers: Implications for Folding and Assembly.

Authors:  Chendi Niu; Yang Yang; Angela Huynh; Ishac Nazy; Igor A Kaltashov
Journal:  Biophys J       Date:  2020-04-21       Impact factor: 4.033

8.  Structural elucidation of fucosylated chondroitin sulfates from sea cucumber using FTICR-MS/MS.

Authors:  Isaac Agyekum; Lauren Pepi; Yanlei Yu; Junhui Li; Lufeng Yan; Robert J Linhardt; Shiguo Chen; I Jonathan Amster
Journal:  Eur J Mass Spectrom (Chichester)       Date:  2017-09-19       Impact factor: 1.067

9.  De Novo Sequencing of Complex Mixtures of Heparan Sulfate Oligosaccharides.

Authors:  Rongrong Huang; Chengli Zong; Andre Venot; Yulun Chiu; Dandan Zhou; Geert-Jan Boons; Joshua S Sharp
Journal:  Anal Chem       Date:  2016-04-27       Impact factor: 6.986

Review 10.  The challenge and promise of glycomics.

Authors:  Richard D Cummings; J Michael Pierce
Journal:  Chem Biol       Date:  2014-01-16
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