Literature DB >> 23318679

Studies on hydrogenase.

Tatsuhiko Yagi1, Yoshiki Higuchi.   

Abstract

Hydrogenases are microbial enzymes which catalyze uptake and production of H(2). Hydrogenases are classified into 10 classes based on the electron carrier specificity, or into 3 families, [NiFe]-family (including [NiFeSe]-subfamily), [FeFe]-family and [Fe]-family, based on the metal composition of the active site. H(2) is heterolytically cleaved on the enzyme (E) to produce EH(a)H(b), where H(a) and H(b) have different rate constants for exchange with the medium hydron. X-ray crystallography unveiled the three-dimensional structures of hydrogenases. The simplest [NiFe]-hydrogenase is a heterodimer, in which the large subunit bears the Ni-Fe center buried deep in the protein, and the small subunit bears iron-sulfur clusters, which mediate electron transfer between the Ni-Fe center and the protein surface. Some hydrogenases have additional subunit(s) for interaction with their electron carriers. Various redox states of the enzyme were characterized by EPR, FTIR, etc. Based on the kinetic, structural and spectroscopic studies, the catalytic mechanism of [NiFe]-hydrogenase was proposed to explain H(2)-uptake, H(2)-production and isotopic exchange reactions.(Communicated by Shigekazu NAGATA, M.J.A.).

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Year:  2013        PMID: 23318679      PMCID: PMC3611953          DOI: 10.2183/pjab.89.16

Source DB:  PubMed          Journal:  Proc Jpn Acad Ser B Phys Biol Sci        ISSN: 0386-2208            Impact factor:   3.493


  88 in total

1.  Structural basis for a [4Fe-3S] cluster in the oxygen-tolerant membrane-bound [NiFe]-hydrogenase.

Authors:  Yasuhito Shomura; Ki-Seok Yoon; Hirofumi Nishihara; Yoshiki Higuchi
Journal:  Nature       Date:  2011-10-16       Impact factor: 49.962

2.  Properties of purified hydrogenase from the particulate fraction of Desulfovibrio vulgaris, Miyazaki.

Authors:  T Yagi; K Kimura; H Daidoji; F Sakai; S Tamura
Journal:  J Biochem       Date:  1976-03       Impact factor: 3.387

3.  Electron paramagnetic resonance studies on the mechanism of activation and the catalytic cycle of the nickel-containing hydrogenase from Desulfovibrio gigas.

Authors:  M Teixeira; I Moura; A V Xavier; B H Huynh; D V DerVartanian; H D Peck; J LeGall; J J Moura
Journal:  J Biol Chem       Date:  1985-07-25       Impact factor: 5.157

4.  Effect of anaerobiosis on photosynthetic reactions and nitrogen metabolism of algae with and without hydrogenase.

Authors:  E Kessler
Journal:  Arch Mikrobiol       Date:  1973-10-19

5.  The electron carrier specificities of the hydrogenases of different origins.

Authors:  N Tamiya; Y Yamaguchi; M Honya; T Yagi
Journal:  Biochem Biophys Res Commun       Date:  1966-01-04       Impact factor: 3.575

6.  The pH dependence of proton-deuterium exchange, hydrogen production and uptake catalyzed by hydrogenases from sulfate-reducing bacteria.

Authors:  P A Lespinat; Y Berlier; G Fauque; M Czechowski; B Dimon; J Le Gall
Journal:  Biochimie       Date:  1986-01       Impact factor: 4.079

7.  Characterization of an extremely thermophilic and oxygen-stable membrane-bound hydrogenase from a marine hydrogen-oxidizing bacterium Hydrogenovibrio marinus.

Authors:  H Nishihara; Y Miyashita; K Aoyama; T Kodama; Y Igarashi; Y Takamura
Journal:  Biochem Biophys Res Commun       Date:  1997-03-27       Impact factor: 3.575

8.  Single crystal EPR studies of the oxidized active site of [NiFe] hydrogenase from Desulfovibrio vulgaris Miyazaki F.

Authors:  O Trofanchuk; M Stein; C Gessner; F Lendzian; Y Higuchi; W Lubitz
Journal:  J Biol Inorg Chem       Date:  2000-02       Impact factor: 3.358

9.  H2-forming methylenetetrahydromethanopterin dehydrogenase, a novel type of hydrogenase without iron-sulfur clusters in methanogenic archaea.

Authors:  C Zirngibl; W Van Dongen; B Schwörer; R Von Bünau; M Richter; A Klein; R K Thauer
Journal:  Eur J Biochem       Date:  1992-09-01

10.  Stereochemical studies of a selenium-containing hydrogenase from Methanococcus vannielii: determination of the absolute configuration of C-5 chirally labeled dihydro-8-hydroxy-5-deazaflavin cofactor.

Authors:  S Yamazaki; L Tsai; T C Stadtman; T Teshima; A Nakaji; T Shiba
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

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  4 in total

1.  A threonine stabilizes the NiC and NiR catalytic intermediates of [NiFe]-hydrogenase.

Authors:  Abbas Abou-Hamdan; Pierre Ceccaldi; Hugo Lebrette; Oscar Gutiérrez-Sanz; Pierre Richaud; Laurent Cournac; Bruno Guigliarelli; Antonio L De Lacey; Christophe Léger; Anne Volbeda; Bénédicte Burlat; Sébastien Dementin
Journal:  J Biol Chem       Date:  2015-02-09       Impact factor: 5.157

Review 2.  Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.

Authors:  Sven T Stripp; Benjamin R Duffus; Vincent Fourmond; Christophe Léger; Silke Leimkühler; Shun Hirota; Yilin Hu; Andrew Jasniewski; Hideaki Ogata; Markus W Ribbe
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

Review 3.  Cyanobacterial hydrogenases and hydrogen metabolism revisited: recent progress and future prospects.

Authors:  Namita Khanna; Peter Lindblad
Journal:  Int J Mol Sci       Date:  2015-05-08       Impact factor: 5.923

4.  New assay method based on Raman spectroscopy for enzymes reacting with gaseous substrates.

Authors:  Yuka Kawahara-Nakagawa; Koji Nishikawa; Satoru Nakashima; Shota Inoue; Takehiro Ohta; Takashi Ogura; Yasuteru Shigeta; Katsuyuki Fukutani; Tatsuhiko Yagi; Yoshiki Higuchi
Journal:  Protein Sci       Date:  2019-01-16       Impact factor: 6.725

  4 in total

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