Literature DB >> 23314792

Deep sequencing identifies regulated small RNAs in Dugesia japonica.

Zhenbiao Xu1, Maoshan Chen, Zhonggan Ren, Nian Zhang, Hanmei Xu, Xiao Liu, Geng Tian, Linxia Song, Huanming Yang.   

Abstract

MicroRNAs (miRNAs), which are 18 ~ 24 nucleotides length, play important roles in regulating the expression of gene at the post-transcription level. Dugesia japonica is a branch of planarian organism. It is a model organism for studying the role of miRNAs in stem cell function. Next generation sequencing technology was used to identify the miRNAs of D. japonica. Bioinformatic analysis showed that 262 miRNA and miRNA* sequences were discovered, of which 102 miRNAs were the same as Schmidtea mediterranea and 160 miRNAs were related to other animals. There were 21 miRNAs expressed differentially after amputation. Results also revealed that some key miRNAs might play essential roles in the regeneration progress and some miRNAs might take part in the regulation progress of polarity regeneration in D. japonica.

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Year:  2013        PMID: 23314792     DOI: 10.1007/s11033-012-2485-z

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  38 in total

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4.  Planarian Hedgehog/Patched establishes anterior-posterior polarity by regulating Wnt signaling.

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Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-11       Impact factor: 11.205

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Review 7.  MiRNAs and cancer.

Authors:  Rosa Visone; Carlo M Croce
Journal:  Am J Pathol       Date:  2009-03-05       Impact factor: 4.307

8.  Deep sequencing identifies new and regulated microRNAs in Schmidtea mediterranea.

Authors:  Yi-Chien Lu; Magda Smielewska; Dasaradhi Palakodeti; Michael T Lovci; Stefan Aigner; Gene W Yeo; Brenton R Graveley
Journal:  RNA       Date:  2009-06-24       Impact factor: 4.942

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Authors:  Erika Varkonyi-Gasic; Rongmei Wu; Marion Wood; Eric F Walton; Roger P Hellens
Journal:  Plant Methods       Date:  2007-10-12       Impact factor: 4.993

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  6 in total

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Journal:  Mar Biotechnol (NY)       Date:  2015-02-26       Impact factor: 3.619

2.  Identification of microRNA genes in three opisthorchiids.

Authors:  Vladimir Y Ovchinnikov; Dmitry A Afonnikov; Gennady V Vasiliev; Elena V Kashina; Banchob Sripa; Viacheslav A Mordvinov; Alexey V Katokhin
Journal:  PLoS Negl Trop Dis       Date:  2015-04-21

3.  Substantial loss of conserved and gain of novel MicroRNA families in flatworms.

Authors:  Bastian Fromm; Merete Molton Worren; Christoph Hahn; Eivind Hovig; Lutz Bachmann
Journal:  Mol Biol Evol       Date:  2013-09-11       Impact factor: 16.240

4.  Characterization and expression analysis of microRNAs in the tube foot of sea cucumber Apostichopus japonicus.

Authors:  Hongdi Wang; Shikai Liu; Jun Cui; Chengze Li; Xuemei Qiu; Yaqing Chang; Zhanjiang Liu; Xiuli Wang
Journal:  PLoS One       Date:  2014-11-05       Impact factor: 3.240

5.  Different classes of small RNAs are essential for head regeneration in the planarian Dugesia japonica.

Authors:  Zhonghong Cao; David Rosenkranz; Suge Wu; Hongjin Liu; Qiuxiang Pang; Xiufang Zhang; Baohua Liu; Bosheng Zhao
Journal:  BMC Genomics       Date:  2020-12-07       Impact factor: 3.969

6.  Identification of neoblast- and regeneration-specific miRNAs in the planarian Schmidtea mediterranea.

Authors:  Vidyanand Sasidharan; Yi-Chien Lu; Dhiru Bansal; Pranavi Dasari; Deepak Poduval; Aswin Seshasayee; Alissa M Resch; Brenton R Graveley; Dasaradhi Palakodeti
Journal:  RNA       Date:  2013-08-23       Impact factor: 4.942

  6 in total

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