Literature DB >> 23314033

Next-generation sequencing technologies and their impact on microbial genomics.

Brian M Forde1, Paul W O'Toole.   

Abstract

Next-generation sequencing technologies have had a dramatic impact in the field of genomic research through the provision of a low cost, high-throughput alternative to traditional capillary sequencers. These new sequencing methods have surpassed their original scope and now provide a range of utility-based applications, which allow for a more comprehensive analysis of the structure and content of microbial genomes than was previously possible. With the commercialization of a third generation of sequencing technologies imminent, we discuss the applications of current next-generation sequencing methods and explore their impact on and contribution to microbial genome research.

Keywords:  NGS; RNA-seq; genome sequencing; metagenomics; prokaryotes; resequencing

Mesh:

Year:  2013        PMID: 23314033     DOI: 10.1093/bfgp/els062

Source DB:  PubMed          Journal:  Brief Funct Genomics        ISSN: 2041-2649            Impact factor:   4.241


  21 in total

Review 1.  On the study of microbial transcriptomes using second- and third-generation sequencing technologies.

Authors:  Sang Chul Choi
Journal:  J Microbiol       Date:  2016-08-02       Impact factor: 3.422

Review 2.  Microbial sequence typing in the genomic era.

Authors:  Marcos Pérez-Losada; Miguel Arenas; Eduardo Castro-Nallar
Journal:  Infect Genet Evol       Date:  2017-09-21       Impact factor: 3.342

3.  Study of the variation of the Malassezia load in the interdigital fold of dogs with pododermatitis.

Authors:  Leyna Díaz; Gemma Castellá; M Rosa Bragulat; Andreu Paytuví-Gallart; Walter Sanseverino; F Javier Cabañes
Journal:  Vet Res Commun       Date:  2022-06-15       Impact factor: 2.459

4.  Gene expression profile analysis and target gene discovery of Mycobacterium tuberculosis biofilm.

Authors:  Fangxue Ma; Hong Zhou; Zhiqiang Yang; Chao Wang; Yanan An; Lihui Ni; Mingyuan Liu; Yang Wang; Lu Yu
Journal:  Appl Microbiol Biotechnol       Date:  2021-06-14       Impact factor: 4.813

Review 5.  Reframing the Teenage Wasteland: Adolescent Microbiota-Gut-Brain Axis.

Authors:  Karen-Anne McVey Neufeld; Pauline Luczynski; Timothy G Dinan; John F Cryan
Journal:  Can J Psychiatry       Date:  2016-02-24       Impact factor: 4.356

6.  A next generation semiconductor based sequencing approach for the identification of meat species in DNA mixtures.

Authors:  Francesca Bertolini; Marco Ciro Ghionda; Enrico D'Alessandro; Claudia Geraci; Vincenzo Chiofalo; Luca Fontanesi
Journal:  PLoS One       Date:  2015-04-29       Impact factor: 3.240

7.  Analysis of the intestinal lumen microbiota in an animal model of colorectal cancer.

Authors:  Qingchao Zhu; Zhiming Jin; Wen Wu; Renyuan Gao; Bomin Guo; Zhiguang Gao; Yongzhi Yang; Huanlong Qin
Journal:  PLoS One       Date:  2014-03-06       Impact factor: 3.240

8.  BacWGSTdb, a database for genotyping and source tracking bacterial pathogens.

Authors:  Zhi Ruan; Ye Feng
Journal:  Nucleic Acids Res       Date:  2015-10-03       Impact factor: 16.971

Review 9.  Applications of Next-generation Sequencing in Systemic Autoimmune Diseases.

Authors:  Yiyangzi Ma; Na Shi; Mengtao Li; Fei Chen; Haitao Niu
Journal:  Genomics Proteomics Bioinformatics       Date:  2015-10-15       Impact factor: 7.691

10.  Bespoke microbiome therapy to manage plant diseases.

Authors:  Murali Gopal; Alka Gupta; George V Thomas
Journal:  Front Microbiol       Date:  2013-12-03       Impact factor: 5.640

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