Literature DB >> 23313475

Chemical crosslinking and LC/MS analysis to determine protein domain orientation: application to AbrB.

Andrew L Olson1, Fan Liu, Ashley T Tucker, Michael B Goshe, John Cavanagh.   

Abstract

To fully understand the modes of action of multi-protein complexes, it is essential to determine their overall global architecture and the specific relationships between domains and subunits. The transcription factor AbrB is a functional homotetramer consisting of two domains per monomer. Obtaining the high-resolution structure of tetrameric AbrB has been extremely challenging due to the independent character of these domains. To facilitate the structure determination process, we solved the NMR structures of both domains independently and utilized gas-phase cleavable chemical crosslinking and LC/MS(n) analysis to correctly position the domains within the full tetrameric AbrB protein structure.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID： 23313475      PMCID： PMC3570598          DOI： 10.1016/j.bbrc.2012.12.124

Source DB:  PubMed          Journal:  Biochem Biophys Res Commun        ISSN： 0006-291X            Impact factor:   3.575


  18 in total

Review 1.  Single-molecule fluorescence resonance energy transfer.

Authors:  T Ha
Journal:  Methods       Date:  2001-09       Impact factor: 3.608

2.  Role of Cys54 in AbrB multimerization and DNA-binding activity.

Authors:  Z E Phillips; M A Strauch
Journal:  FEMS Microbiol Lett       Date:  2001-09-25       Impact factor: 2.742

Review 3.  Identifying conformational changes with site-directed spin labeling.

Authors:  W L Hubbell; D S Cafiso; C Altenbach
Journal:  Nat Struct Biol       Date:  2000-09

4.  Macromolecular assembly of the transition state regulator AbrB in its unbound and complexed states probed by microelectrospray ionization mass spectrometry.

Authors:  Linda M Benson; Jeffrey L Vaughn; Mark A Strauch; Benjamin G Bobay; Richele Thompson; Stephen Naylor; John Cavanagh
Journal:  Anal Biochem       Date:  2002-07-15       Impact factor: 3.365

5.  Evaluation of the DNA binding tendencies of the transition state regulator AbrB.

Authors:  Benjamin G Bobay; Linda Benson; Stephen Naylor; Brett Feeney; A Clay Clark; Michael B Goshe; Mark A Strauch; Richele Thompson; John Cavanagh
Journal:  Biochemistry       Date:  2004-12-28       Impact factor: 3.162

6.  Revised structure of the AbrB N-terminal domain unifies a diverse superfamily of putative DNA-binding proteins.

Authors:  Benjamin G Bobay; Antonina Andreeva; Geoffrey A Mueller; John Cavanagh; Alexey G Murzin
Journal:  FEBS Lett       Date:  2005-10-04       Impact factor: 4.124

7.  AbrB-like transcription factors assume a swapped hairpin fold that is evolutionarily related to double-psi beta barrels.

Authors:  Murray Coles; Sergej Djuranovic; Johannes Söding; Tancred Frickey; Kristin Koretke; Vincent Truffault; Jörg Martin; Andrei N Lupas
Journal:  Structure       Date:  2005-06       Impact factor: 5.006

8.  Collision-induced dissociative chemical cross-linking reagents and methodology: Applications to protein structural characterization using tandem mass spectrometry analysis.

Authors:  Erik J Soderblom; Michael B Goshe
Journal:  Anal Chem       Date:  2006-12-01       Impact factor: 6.986

Review 9.  Chemical cross-linking and mass spectrometry to map three-dimensional protein structures and protein-protein interactions.

Authors:  Andrea Sinz
Journal:  Mass Spectrom Rev       Date:  2006 Jul-Aug       Impact factor: 10.946

10.  The DNA-binding specificity of the Bacillus anthracis AbrB protein.

Authors:  Mark A Strauch; Petek Ballar; Austin J Rowshan; Katherine L Zoller
Journal:  Microbiology       Date:  2005-06       Impact factor: 2.777
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  6 in total

1.  The Structure of the Biofilm-controlling Response Regulator BfmR from Acinetobacter baumannii Reveals Details of Its DNA-binding Mechanism.

Authors:  G Logan Draughn; Morgan E Milton; Erik A Feldmann; Benjamin G Bobay; Braden M Roth; Andrew L Olson; Richele J Thompson; Luis A Actis; Christopher Davies; John Cavanagh
Journal:  J Mol Biol       Date:  2018-02-10       Impact factor: 5.469

2.  A DNA mimic: the structure and mechanism of action for the anti-repressor protein AbbA.

Authors:  Ashley T Tucker; Benjamin G Bobay; Allison V Banse; Andrew L Olson; Erik J Soderblom; M Arthur Moseley; Richele J Thompson; Kristen M Varney; Richard Losick; John Cavanagh
Journal:  J Mol Biol       Date:  2014-02-15       Impact factor: 5.469

3.  Structure and DNA-binding traits of the transition state regulator AbrB.

Authors:  Andrew L Olson; Ashley T Tucker; Benjamin G Bobay; Erik J Soderblom; M Arthur Moseley; Richele J Thompson; John Cavanagh
Journal:  Structure       Date:  2014-10-09       Impact factor: 5.006

4.  Cross-linking electrochemical mass spectrometry for probing protein three-dimensional structures.

Authors:  Qiuling Zheng; Hao Zhang; Lingying Tong; Shiyong Wu; Hao Chen
Journal:  Anal Chem       Date:  2014-09-04       Impact factor: 6.986

5.  Substitutional analysis of the C-terminal domain of AbrB revealed its essential role in DNA-binding activity.

Authors:  Svetlana Neubauer; Olga Dolgova; Gregory Präg; Rainer Borriss; Oliwia Makarewicz
Journal:  PLoS One       Date:  2014-05-15       Impact factor: 3.240

6.  Re-sensitizing Multidrug Resistant Bacteria to Antibiotics by Targeting Bacterial Response Regulators: Characterization and Comparison of Interactions between 2-Aminoimidazoles and the Response Regulators BfmR from Acinetobacter baumannii and QseB from Francisella spp.

Authors:  Morgan E Milton; Bradley M Minrovic; Danni L Harris; Brian Kang; David Jung; Caleb P Lewis; Richele J Thompson; Roberta J Melander; Daina Zeng; Christian Melander; John Cavanagh
Journal:  Front Mol Biosci       Date:  2018-02-13
  6 in total

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