Literature DB >> 23312618

HOPE-preservation of paraffin-embedded sputum samples--a new way of bioprofiling in COPD.

Frauke Pedersen1, Sebastian Marwitz, Sophie Seehase, Anne-Marie Kirsten, Peter Zabel, Ekkehard Vollmer, Klaus F Rabe, Helgo Magnussen, Henrik Watz, Torsten Goldmann.   

Abstract

Induced sputum is a non-invasive sampling technique for the analysis of airway inflammation in various lung diseases and comprises valuable potential for the identification of biomarkers and therapeutic targets by molecular methods. In the context of biobanking with preservation of induced sputum samples for subsequent analyses we applied the HEPES-glutamic acid buffer-mediated organic solvent protection effect (HOPE)-technique for preparation of induced sputum samples. Induced sputum samples of 20 patients with moderate to severe chronic obstructive pulmonary disease (COPD) and 12 healthy controls were collected. Cell pellets of induced sputum samples were preserved with HOPE and subsequently embedded in paraffin. Immunostaining of paraffin-block sections for interleukin-8, interleukin-17, myeloperoxidase, matrixmetalloproteinase-9, CD68, and CD8 revealed distinct signals without antigen retrieval. Moreover, RNA was extracted and successfully used for transcription microarray analysis. Sputum samples preserved by the HOPE-technique display a tool to address scientific approaches in pulmonary research, which can enable the identification of new biomarkers and therapeutic targets in respiratory diseases.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 23312618     DOI: 10.1016/j.rmed.2012.12.006

Source DB:  PubMed          Journal:  Respir Med        ISSN: 0954-6111            Impact factor:   3.415


  4 in total

1.  The tissue is the issue: improved methylome analysis from paraffin-embedded tissues by application of the HOPE technique.

Authors:  Sebastian Marwitz; Julia Kolarova; Martin Reck; Niels Reinmuth; Christian Kugler; Ines Schädlich; Andrea Haake; Peter Zabel; Ekkehard Vollmer; Reiner Siebert; Torsten Goldmann; Ole Ammerpohl
Journal:  Lab Invest       Date:  2014-06-16       Impact factor: 5.662

2.  Raised sputum extracellular DNA confers lung function impairment and poor symptom control in an exacerbation-susceptible phenotype of neutrophilic asthma.

Authors:  Mustafa Abdo; Mohib Uddin; Torsten Goldmann; Sebastian Marwitz; Thomas Bahmer; Olaf Holz; Anne-Marie Kirsten; Frederik Trinkmann; Erika von Mutius; Matthias Kopp; Gesine Hansen; Klaus F Rabe; Henrik Watz; Frauke Pedersen
Journal:  Respir Res       Date:  2021-06-03

3.  Longitudinal measurement of airway inflammation over one year in children and adults with intermittent asthma.

Authors:  Frauke Pedersen; Olaf Holz; Frank Kanniess; Stefan Zielen; Johannes Schulze; Adrian Gillissen; Andrea von Berg; Dietrich Berdel; Jutta Beier; Kai Beeh; Maike Schnoor; Helgo Magnussen
Journal:  BMC Res Notes       Date:  2014-12-17

4.  Exploration of the sputum methylome and omics deconvolution by quadratic programming in molecular profiling of asthma and COPD: the road to sputum omics 2.0.

Authors:  Espen E Groth; Melanie Weber; Thomas Bahmer; Frauke Pedersen; Anne Kirsten; Daniela Börnigen; Klaus F Rabe; Henrik Watz; Ole Ammerpohl; Torsten Goldmann
Journal:  Respir Res       Date:  2020-10-19
  4 in total

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