Literature DB >> 23311430

Mutagenesis of a conserved glutamate reveals the contribution of electrostatic energy to adenosylcobalamin co-C bond homolysis in ornithine 4,5-aminomutase and methylmalonyl-CoA mutase.

Caitlyn Makins1, Alex V Pickering, Chloe Mariani, Kirsten R Wolthers.   

Abstract

Binding of substrate to ornithine 4,5-aminomutase (OAM) and methylmalonyl-CoA mutase (MCM) leads to the formation of an electrostatic interaction between a conserved glutamate side chain and the adenosyl ribose of the adenosylcobalamin (AdoCbl) cofactor. The contribution of this residue (Glu338 in OAM from Clostridium sticklandii and Glu392 in human MCM) to AdoCbl Co-C bond labilization and catalysis was evaluated by substituting the residue with a glutamine, aspartate, or alanine. The OAM variants, E338Q, E338D, and E338A, showed 90-, 380-, and 670-fold reductions in catalytic turnover and 20-, 60-, and 220-fold reductions in k(cat)/K(m), respectively. Likewise, the MCM variants, E392Q, E392D, and E392A, showed 16-, 330-, and 12-fold reductions in k(cat), respectively. Binding of substrate to OAM is unaffected by the single-amino acid mutation as stopped-flow absorbance spectroscopy showed that the rates of external aldimine formation in the OAM variants were similar to that of the native enzyme. The decrease in the level of catalysis is instead linked to impaired Co-C bond rupture, as UV-visible spectroscopy did not show detectable AdoCbl homolysis upon binding of the physiological substrate, d-ornithine. AdoCbl homolysis was also not detected in the MCM mutants, as it was for the native enzyme. We conclude from these results that a gradual weakening of the electrostatic energy between the protein and the ribose leads to a progressive increase in the activation energy barrier for Co-C bond homolysis, thereby pointing to a key role for the conserved polar glutamate residue in controlling the initial generation of radical species.

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Year:  2013        PMID: 23311430     DOI: 10.1021/bi3012719

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  Glutamate 338 is an electrostatic facilitator of C-Co bond breakage in a dynamic/electrostatic model of catalysis by ornithine aminomutase.

Authors:  Binuraj R K Menon; Navya Menon; Karl Fisher; Stephen E J Rigby; David Leys; Nigel S Scrutton
Journal:  FEBS J       Date:  2015-02-12       Impact factor: 5.542

Review 2.  Large-scale domain motions and pyridoxal-5'-phosphate assisted radical catalysis in coenzyme B12-dependent aminomutases.

Authors:  Amarendra Nath Maity; Yung-Han Chen; Shyue-Chu Ke
Journal:  Int J Mol Sci       Date:  2014-02-20       Impact factor: 5.923

3.  A mechanochemical switch to control radical intermediates.

Authors:  Elizabeth Brunk; Whitney F Kellett; Nigel G J Richards; Ursula Rothlisberger
Journal:  Biochemistry       Date:  2014-06-06       Impact factor: 3.162

4.  Dynamic, electrostatic model for the generation and control of high-energy radical intermediates by a coenzyme B₁₂-dependent enzyme.

Authors:  Zhi-Gang Chen; Monika A Ziętek; Henry J Russell; Shirley Tait; Sam Hay; Alex R Jones; Nigel S Scrutton
Journal:  Chembiochem       Date:  2013-08-19       Impact factor: 3.164

5.  Role of active site residues in promoting cobalt-carbon bond homolysis in adenosylcobalamin-dependent mutases revealed through experiment and computation.

Authors:  Gabriel D Román-Meléndez; Patrick von Glehn; Jeremy N Harvey; Adrian J Mulholland; E Neil G Marsh
Journal:  Biochemistry       Date:  2013-12-20       Impact factor: 3.162

6.  A conformational sampling model for radical catalysis in pyridoxal phosphate- and cobalamin-dependent enzymes.

Authors:  Binuraj R K Menon; Karl Fisher; Stephen E J Rigby; Nigel S Scrutton; David Leys
Journal:  J Biol Chem       Date:  2014-09-11       Impact factor: 5.157

7.  The mutation Glu151Asp in the B-component of the Bacillus cereus non-hemolytic enterotoxin (Nhe) leads to a diverging reactivity in antibody-based detection systems.

Authors:  Andrea Didier; Nadja Jeßberger; Victoria Krey; Richard Dietrich; Siegfried Scherer; Erwin Märtlbauer
Journal:  Toxins (Basel)       Date:  2015-11-09       Impact factor: 4.546

  7 in total

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