Literature DB >> 23308028

Reply to "codon usage frequency of RNA virus genomes from high-temperature acidic-environment metagenomes".

Mark Young, Benjamin Bolduc, Daniel P Shaughnessy, Francisco F Roberto, Yuri I Wolf, Eugene V Koonin.   

Abstract

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Year:  2013        PMID： 23308028      PMCID： PMC3554147          DOI： 10.1128/JVI.02883-12

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


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  19 in total

1.  Studies on the relationships between the synonymous codon usage and protein secondary structural units.

Authors:  S K Gupta; S Majumdar; T K Bhattacharya; T C Ghosh
Journal:  Biochem Biophys Res Commun       Date:  2000-03-24       Impact factor: 3.575

2.  Studies on codon usage in Entamoeba histolytica.

Authors:  T C Ghosh; S K Gupta; S Majumdar
Journal:  Int J Parasitol       Date:  2000-05       Impact factor: 3.981

3.  The extent of codon usage bias in human RNA viruses and its evolutionary origin.

Authors:  Gareth M Jenkins; Edward C Holmes
Journal:  Virus Res       Date:  2003-03       Impact factor: 3.303

4.  Thermophilic prokaryotes have characteristic patterns of codon usage, amino acid composition and nucleotide content.

Authors:  Gregory A C Singer; Donal A Hickey
Journal:  Gene       Date:  2003-10-23       Impact factor: 3.688

5.  Synonymous codon usage is subject to selection in thermophilic bacteria.

Authors:  David J Lynn; Gregory A C Singer; Donal A Hickey
Journal:  Nucleic Acids Res       Date:  2002-10-01       Impact factor: 16.971

6.  Synonymous codon usage in adenoviruses: influence of mutation, selection and protein hydropathy.

Authors:  Sabyasachi Das; Sandip Paul; Chitra Dutta
Journal:  Virus Res       Date:  2005-11-22       Impact factor: 3.303

7.  Factors influencing the synonymous codon and amino acid usage bias in AT-rich Pseudomonas aeruginosa phage PhiKZ.

Authors:  K Sau; S Sau; S C Mandal; T C Ghosh
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2005-09       Impact factor: 3.848

8.  Synonymous codon usage bias in 16 Staphylococcus aureus phages: implication in phage therapy.

Authors:  K Sau; S K Gupta; S Sau; T C Ghosh
Journal:  Virus Res       Date:  2005-11       Impact factor: 3.303

9.  The characteristics of the synonymous codon usage in enterovirus 71 virus and the effects of host on the virus in codon usage pattern.

Authors:  Yong-sheng Liu; Jian-hua Zhou; Hao-tai Chen; Li-na Ma; Zygmunt Pejsak; Yao-zhong Ding; Jie Zhang
Journal:  Infect Genet Evol       Date:  2011-03-05       Impact factor: 3.342

10.  Analysis of synonymous codon usage in SARS Coronavirus and other viruses in the Nidovirales.

Authors:  Wanjun Gu; Tong Zhou; Jianmin Ma; Xiao Sun; Zuhong Lu
Journal:  Virus Res       Date:  2004-05       Impact factor: 3.303
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  1 in total

1.  Diversity of putative archaeal RNA viruses in metagenomic datasets of a yellowstone acidic hot spring.

Authors:  Hongming Wang; Yongxin Yu; Taigang Liu; Yingjie Pan; Shuling Yan; Yongjie Wang
Journal:  Springerplus       Date:  2015-04-18
  1 in total

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