Literature DB >> 23307121

Rapid extraction and preservation of genomic DNA from human samples.

D Kalyanasundaram1, J-H Kim, W-H Yeo, K Oh, K-H Lee, M-H Kim, S-M Ryew, S-G Ahn, D Gao, G A Cangelosi, J-H Chung.   

Abstract

Simple and rapid extraction of human genomic DNA remains a bottleneck for genome analysis and disease diagnosis. Current methods using microfilters require cumbersome, multiple handling steps in part because salt conditions must be controlled for attraction and elution of DNA in porous silica. We report a novel extraction method of human genomic DNA from buccal swab and saliva samples. DNA is attracted onto a gold-coated microchip by an electric field and capillary action while the captured DNA is eluted by thermal heating at 70 °C. A prototype device was designed to handle four microchips, and a compatible protocol was developed. The extracted DNA using microchips was characterized by qPCR for different sample volumes, using different lengths of PCR amplicon, and nuclear and mitochondrial genes. In comparison with a commercial kit, an equivalent yield of DNA extraction was achieved with fewer steps. Room-temperature preservation for 1 month was demonstrated for captured DNA, facilitating straightforward collection, delivery, and handling of genomic DNA in an environment-friendly protocol.

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Year:  2013        PMID: 23307121      PMCID: PMC3566295          DOI: 10.1007/s00216-012-6637-8

Source DB:  PubMed          Journal:  Anal Bioanal Chem        ISSN: 1618-2642            Impact factor:   4.142


  23 in total

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Journal:  Electrophoresis       Date:  2002-03       Impact factor: 3.535

2.  Isolation of genomic DNA from buccal swabs for forensic analysis, using fully automated silica-membrane purification technology.

Authors:  Thomas Hanselle; Michael Otte; Thomas Schnibbe; Emma Smythe; Frank Krieg-Schneider
Journal:  Leg Med (Tokyo)       Date:  2003-03       Impact factor: 1.376

Review 3.  Dielectrophoresis for the manipulation of nanobioparticles.

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Authors:  Carol W Price; Daniel C Leslie; James P Landers
Journal:  Lab Chip       Date:  2009-06-22       Impact factor: 6.799

5.  Automated genomic DNA extraction from saliva using the QIAxtractor.

Authors:  Henry Keijzer; Silvia C Endenburg; Marcel G Smits; Miriam Koopmann
Journal:  Clin Chem Lab Med       Date:  2010-05       Impact factor: 3.694

6.  Heat-induced depyrimidination of deoxyribonucleic acid in neutral solution.

Authors:  T Lindahl; O Karlström
Journal:  Biochemistry       Date:  1973-12-04       Impact factor: 3.162

7.  An inexpensive and simple method for DNA purifications on silica particles.

Authors:  M J Carter; I D Milton
Journal:  Nucleic Acids Res       Date:  1993-02-25       Impact factor: 16.971

8.  The alkaline denaturation of DNA.

Authors:  M Ageno; E Dore; C Frontali
Journal:  Biophys J       Date:  1969-11       Impact factor: 4.033

9.  Characterization of monocrotaline pyrrole-induced DNA cross-linking in pulmonary artery endothelium.

Authors:  J G Wagner; T W Petry; R A Roth
Journal:  Am J Physiol       Date:  1993-05

10.  Purification and preconcentration of genomic DNA from whole cell lysates using photoactivated polycarbonate (PPC) microfluidic chips.

Authors:  Malgorzata A Witek; Shawn D Llopis; Abigail Wheatley; Robin L McCarley; Steven A Soper
Journal:  Nucleic Acids Res       Date:  2006-06-06       Impact factor: 16.971

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Authors:  Reza Hajian; Sarah Balderston; Thanhtra Tran; Tara deBoer; Jessy Etienne; Mandeep Sandhu; Noreen A Wauford; Jing-Yi Chung; Jolie Nokes; Mitre Athaiya; Jacobo Paredes; Regis Peytavi; Brett Goldsmith; Niren Murthy; Irina M Conboy; Kiana Aran
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Review 3.  AC Electrokinetics of Physiological Fluids for Biomedical Applications.

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  3 in total

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