Literature DB >> 23304388

Assessing pneumonia identification from time-ordered narrative reports.

Cosmin A Bejan1, Lucy Vanderwende, Mark M Wurfel, Meliha Yetisgen-Yildiz.   

Abstract

In this paper, we present a natural language processing system that can be used in hospital surveillance applications with the purpose of identifying patients with pneumonia. For this purpose, we built a sequence of supervised classifiers, where the dataset corresponding to each classifier consists of a restricted set of time-ordered narrative reports. In this way the pneumonia surveillance application will be able to invoke the most suitable classifier for each patient based on the period of time that has elapsed since the patient was admitted into the hospital. Our system achieves significantly better results when compared with a baseline previously proposed for pneumonia identification.

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Year:  2012        PMID: 23304388      PMCID: PMC3540463     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  17 in total

1.  Comparing expert systems for identifying chest x-ray reports that support pneumonia.

Authors:  W W Chapman; P J Haug
Journal:  Proc AMIA Symp       Date:  1999

2.  Automatic identification of pneumonia related concepts on chest x-ray reports.

Authors:  M Fiszman; W W Chapman; S R Evans; P J Haug
Journal:  Proc AMIA Symp       Date:  1999

3.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

4.  A comparison of classification algorithms to automatically identify chest X-ray reports that support pneumonia.

Authors:  W W Chapman; M Fizman; B E Chapman; P J Haug
Journal:  J Biomed Inform       Date:  2001-02       Impact factor: 6.317

5.  Modeling the effects of genetic factors on late-onset diseases in cohort studies.

Authors:  Mark E Glickman; David R Gagnon
Journal:  Lifetime Data Anal       Date:  2002-09       Impact factor: 1.588

6.  Infectious Diseases Society of America/American Thoracic Society consensus guidelines on the management of community-acquired pneumonia in adults.

Authors:  Lionel A Mandell; Richard G Wunderink; Antonio Anzueto; John G Bartlett; G Douglas Campbell; Nathan C Dean; Scott F Dowell; Thomas M File; Daniel M Musher; Michael S Niederman; Antonio Torres; Cynthia G Whitney
Journal:  Clin Infect Dis       Date:  2007-03-01       Impact factor: 9.079

7.  Genetic variation in the FAS gene and associations with acute lung injury.

Authors:  Bradford J Glavan; Tarah D Holden; Christopher H Goss; R Anthony Black; Margaret J Neff; Avery B Nathens; Thomas R Martin; Mark M Wurfel
Journal:  Am J Respir Crit Care Med       Date:  2010-09-02       Impact factor: 21.405

8.  A latent model approach to define event onset time in the presence of measurement error.

Authors:  Peng Huang; Ming-Hui Chen; Debajyoti Sinha
Journal:  Stat Interface       Date:  2009       Impact factor: 0.582

9.  Clinical importance of delays in the initiation of appropriate antibiotic treatment for ventilator-associated pneumonia.

Authors:  Manuel Iregui; Suzanne Ward; Glenda Sherman; Victoria J Fraser; Marin H Kollef
Journal:  Chest       Date:  2002-07       Impact factor: 9.410

Review 10.  Diagnosis and treatment of community-acquired pneumonia.

Authors:  M Nawal Lutfiyya; Eric Henley; Linda F Chang; Stephanie Wessel Reyburn
Journal:  Am Fam Physician       Date:  2006-02-01       Impact factor: 3.292

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  4 in total

1.  On-time clinical phenotype prediction based on narrative reports.

Authors:  Cosmin A Bejan; Lucy Vanderwende; Heather L Evans; Mark M Wurfel; Meliha Yetisgen-Yildiz
Journal:  AMIA Annu Symp Proc       Date:  2013-11-16

Review 2.  Natural Language Processing for EHR-Based Computational Phenotyping.

Authors:  Zexian Zeng; Yu Deng; Xiaoyu Li; Tristan Naumann; Yuan Luo
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018-06-25       Impact factor: 3.710

Review 3.  A review of approaches to identifying patient phenotype cohorts using electronic health records.

Authors:  Chaitanya Shivade; Preethi Raghavan; Eric Fosler-Lussier; Peter J Embi; Noemie Elhadad; Stephen B Johnson; Albert M Lai
Journal:  J Am Med Inform Assoc       Date:  2013-11-07       Impact factor: 4.497

4.  Inferring the Interactions of Risk Factors from EHRs.

Authors:  Travis Goodwin; Sanda M Harabagiu
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2016-07-19
  4 in total

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