Literature DB >> 23304383

Exploiting classification correlations for the extraction of evidence-based practice information.

Jin Zhao1, Praveen Bysani, Min-Yen Kan.   

Abstract

Crucial study data in research articles, such as patient details, study design and results, need to be extracted and presented explicitly for the ease of applicability and validity judgment in evidence-based practice. To perform this extraction, we propose to use two soft classifications, one at the sentence level and the other at the word level, and exploit the correlations between them for better accuracy. Our evaluation results show that propagating the results from the first classification to second improves performance of the second and vice versa. Moreover, the two classifications may benefit each other and help improve performance through joint inference algorithms. Another key finding of our work is that irrelevant sentences in the training data need to be properly filtered out; otherwise they compromise system accuracy and make joint inference models less scalable and more expensive to train.

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Mesh:

Year:  2012        PMID: 23304383      PMCID: PMC3540431     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  6 in total

1.  Automated information extraction of key trial design elements from clinical trial publications.

Authors:  Berry de Bruijn; Simona Carini; Svetlana Kiritchenko; Joel Martin; Ida Sim
Journal:  AMIA Annu Symp Proc       Date:  2008-11-06

2.  Improving Search for Evidence-based Practice using Information Extraction.

Authors:  Jin Zhao; Min-Yen Kan; Paula M Procter; Siti Zubaidah; Wai Kin Yip; Goh Mien Li
Journal:  AMIA Annu Symp Proc       Date:  2010-11-13

3.  Combining classifiers for robust PICO element detection.

Authors:  Florian Boudin; Jian-Yun Nie; Joan C Bartlett; Roland Grad; Pierre Pluye; Martin Dawes
Journal:  BMC Med Inform Decis Mak       Date:  2010-05-15       Impact factor: 2.796

4.  Automatic classification of sentences to support Evidence Based Medicine.

Authors:  Su Nam Kim; David Martinez; Lawrence Cavedon; Lars Yencken
Journal:  BMC Bioinformatics       Date:  2011-03-29       Impact factor: 3.169

5.  Identifying gene and protein mentions in text using conditional random fields.

Authors:  Ryan McDonald; Fernando Pereira
Journal:  BMC Bioinformatics       Date:  2005-05-24       Impact factor: 3.169

6.  Sentence retrieval for abstracts of randomized controlled trials.

Authors:  Grace Y Chung
Journal:  BMC Med Inform Decis Mak       Date:  2009-02-10       Impact factor: 2.796

  6 in total
  6 in total

1.  Data extraction methods for systematic review (semi)automation: A living systematic review.

Authors:  Lena Schmidt; Babatunde K Olorisade; Luke A McGuinness; James Thomas; Julian P T Higgins
Journal:  F1000Res       Date:  2021-05-19

2.  Automatic extraction of quantitative data from ClinicalTrials.gov to conduct meta-analyses.

Authors:  Richeek Pradhan; David C Hoaglin; Matthew Cornell; Weisong Liu; Victoria Wang; Hong Yu
Journal:  J Clin Epidemiol       Date:  2018-09-23       Impact factor: 6.437

Review 3.  Automating data extraction in systematic reviews: a systematic review.

Authors:  Siddhartha R Jonnalagadda; Pawan Goyal; Mark D Huffman
Journal:  Syst Rev       Date:  2015-06-15

4.  Improving reference prioritisation with PICO recognition.

Authors:  Austin J Brockmeier; Meizhi Ju; Piotr Przybyła; Sophia Ananiadou
Journal:  BMC Med Inform Decis Mak       Date:  2019-12-05       Impact factor: 2.796

5.  Systematic review automation technologies.

Authors:  Guy Tsafnat; Paul Glasziou; Miew Keen Choong; Adam Dunn; Filippo Galgani; Enrico Coiera
Journal:  Syst Rev       Date:  2014-07-09

6.  Towards Evidence-based Precision Medicine: Extracting Population Information from Biomedical Text using Binary Classifiers and Syntactic Patterns.

Authors:  Kalpana Raja; Naman Dasot; Pawan Goyal; Siddhartha R Jonnalagadda
Journal:  AMIA Jt Summits Transl Sci Proc       Date:  2016-07-20
  6 in total

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