Literature DB >> 23298049

Hydration structure of salt solutions from ab initio molecular dynamics.

Arindam Bankura1, Vincenzo Carnevale, Michael L Klein.   

Abstract

The solvation structures of Na(+), K(+), and Cl(-) ions in aqueous solution have been investigated using density functional theory (DFT) based Car-Parrinello (CP) molecular dynamics (MD) simulations. CPMD trajectories were collected for systems containing three NaCl or KCl ion pairs solvated by 122 water molecules using three different but commonly employed density functionals (BLYP, HCTH, and PBE) with electron correlation treated at the level of the generalized gradient approximation (GGA). The effect of including dispersion forces was analyzed through the use of an empirical correction to the DFT-GGA scheme. Special attention was paid to the hydration characteristics, especially the structural properties of the first solvation shell of the ions, which was investigated through ion-water radial distribution functions, coordination numbers, and angular distribution functions. There are significant differences between the present results obtained from CPMD simulations and those provided by classical MD based on either the CHARMM force field or a polarizable model. Overall, the computed structural properties are in fair agreement with the available experimental results. In particular, the observed coordination numbers 5.0-5.5, 6.0-6.4, and 6.0-6.5 for Na(+), K(+), and Cl(-), respectively, are consistent with X-ray and neutron scattering studies but differ somewhat from some of the many other recent computational studies of these important systems. Possible reasons for the differences are discussed.

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Year:  2013        PMID: 23298049     DOI: 10.1063/1.4772761

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  12 in total

1.  Pairwise-additive force fields for selected aqueous monovalent ions from adaptive force matching.

Authors:  Jicun Li; Feng Wang
Journal:  J Chem Phys       Date:  2015-11-21       Impact factor: 3.488

2.  Pore waters regulate ion permeation in a calcium release-activated calcium channel.

Authors:  Hao Dong; Giacomo Fiorin; Vincenzo Carnevale; Werner Treptow; Michael L Klein
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-07       Impact factor: 11.205

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Journal:  J Am Chem Soc       Date:  2018-12-28       Impact factor: 15.419

4.  Desalination Potential of Aquaporin-Inspired Functionalization of Carbon Nanotubes: Bridging Between Simulation and Experiment.

Authors:  Aysa Güvensoy-Morkoyun; Sadiye Velioğlu; M Göktuğ Ahunbay; Ş Birgül Tantekin-Ersolmaz
Journal:  ACS Appl Mater Interfaces       Date:  2022-06-08       Impact factor: 10.383

5.  Influence of effective polarization on ion and water interactions within a biomimetic nanopore.

Authors:  Linda X Phan; Charlotte I Lynch; Jason Crain; Mark S P Sansom; Stephen J Tucker
Journal:  Biophys J       Date:  2022-05-07       Impact factor: 3.699

6.  Hydrated Sodium Ion Clusters [Na+(H2O)n (n = 1-6)]: An ab initio Study on Structures and Non-covalent Interaction.

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Review 7.  Pore size matters for potassium channel conductance.

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Journal:  J Gen Physiol       Date:  2016-09-12       Impact factor: 4.086

8.  Effective pore size and radius of capture for K(+) ions in K-channels.

Authors:  Hans Moldenhauer; Ignacio Díaz-Franulic; Fernando González-Nilo; David Naranjo
Journal:  Sci Rep       Date:  2016-02-02       Impact factor: 4.379

9.  Force Field Parametrization of Metal Ions from Statistical Learning Techniques.

Authors:  Francesco Fracchia; Gianluca Del Frate; Giordano Mancini; Walter Rocchia; Vincenzo Barone
Journal:  J Chem Theory Comput       Date:  2017-12-06       Impact factor: 6.006

10.  Induced Polarization in Molecular Dynamics Simulations of the 5-HT3 Receptor Channel.

Authors:  Gianni Klesse; Shanlin Rao; Stephen J Tucker; Mark S P Sansom
Journal:  J Am Chem Soc       Date:  2020-05-08       Impact factor: 15.419

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