Literature DB >> 23297233

Bayesian computation via empirical likelihood.

Kerrie L Mengersen1, Pierre Pudlo, Christian P Robert.   

Abstract

Approximate Bayesian computation has become an essential tool for the analysis of complex stochastic models when the likelihood function is numerically unavailable. However, the well-established statistical method of empirical likelihood provides another route to such settings that bypasses simulations from the model and the choices of the approximate Bayesian computation parameters (summary statistics, distance, tolerance), while being convergent in the number of observations. Furthermore, bypassing model simulations may lead to significant time savings in complex models, for instance those found in population genetics. The Bayesian computation with empirical likelihood algorithm we develop in this paper also provides an evaluation of its own performance through an associated effective sample size. The method is illustrated using several examples, including estimation of standard distributions, time series, and population genetics models.

Mesh:

Year:  2013        PMID: 23297233      PMCID: PMC3557074          DOI: 10.1073/pnas.1208827110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Population growth of human Y chromosomes: a study of Y chromosome microsatellites.

Authors:  J K Pritchard; M T Seielstad; A Perez-Lezaun; M W Feldman
Journal:  Mol Biol Evol       Date:  1999-12       Impact factor: 16.240

2.  Detecting a local signature of genetic hitchhiking along a recombining chromosome.

Authors:  Yuseob Kim; Wolfgang Stephan
Journal:  Genetics       Date:  2002-02       Impact factor: 4.562

3.  A coalescent-based method for detecting and estimating recombination from gene sequences.

Authors:  Gil McVean; Philip Awadalla; Paul Fearnhead
Journal:  Genetics       Date:  2002-03       Impact factor: 4.562

4.  Markov chain Monte Carlo without likelihoods.

Authors:  Paul Marjoram; John Molitor; Vincent Plagnol; Simon Tavare
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-08       Impact factor: 11.205

5.  Approximate Bayesian computation in population genetics.

Authors:  Mark A Beaumont; Wenyang Zhang; David J Balding
Journal:  Genetics       Date:  2002-12       Impact factor: 4.562

6.  Consistency of estimators of the population-scaled recombination rate.

Authors:  Paul Fearnhead
Journal:  Theor Popul Biol       Date:  2003-08       Impact factor: 1.570

7.  Lack of confidence in approximate Bayesian computation model choice.

Authors:  Christian P Robert; Jean-Marie Cornuet; Jean-Michel Marin; Natesh S Pillai
Journal:  Proc Natl Acad Sci U S A       Date:  2011-08-29       Impact factor: 11.205

8.  Inferring coalescence times from DNA sequence data.

Authors:  S Tavaré; D J Balding; R C Griffiths; P Donnelly
Journal:  Genetics       Date:  1997-02       Impact factor: 4.562

9.  Bayesian inferences on the recent island colonization history by the bird Zosterops lateralis lateralis.

Authors:  A Estoup; S M Clegg
Journal:  Mol Ecol       Date:  2003-03       Impact factor: 6.185

10.  A model of mutation appropriate to estimate the number of electrophoretically detectable alleles in a finite population.

Authors:  T Ohta; M Kimura
Journal:  Genet Res       Date:  1973-10       Impact factor: 1.588

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  5 in total

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Journal:  Stat Methods Med Res       Date:  2021-09-01       Impact factor: 2.494

2.  Bayesian analysis of immigration in Europe with generalized logistic regression.

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Journal:  J Appl Stat       Date:  2019-07-18       Impact factor: 1.416

3.  Evaluation of spatial Bayesian Empirical Likelihood models in analysis of small area data.

Authors:  Farzana Jahan; Daniel W Kennedy; Earl W Duncan; Kerrie L Mengersen
Journal:  PLoS One       Date:  2022-05-27       Impact factor: 3.752

Review 4.  Approximate Bayesian inference for complex ecosystems.

Authors:  Michael P H Stumpf
Journal:  F1000Prime Rep       Date:  2014-07-17

5.  Accelerating Bayesian inference for evolutionary biology models.

Authors:  Xavier Meyer; Bastien Chopard; Nicolas Salamin
Journal:  Bioinformatics       Date:  2017-03-01       Impact factor: 6.937

  5 in total

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