Literature DB >> 23294006

Glassy character of DNA hydration water.

Alessandro Paciaroni1, Andrea Orecchini, Guido Goracci, Elena Cornicchi, Caterina Petrillo, Francesco Sacchetti.   

Abstract

The coherent excitations of DNA hydration water at 100 K have been investigated by neutron scattering spectroscopy to extract the excess signal of D(2)O-hydrated DNA with respect to dry DNA samples. A structural characterization of the sample, through the analysis of the static structure factor, has suggested that DNA hydration water is largely in an amorphous state up to high hydration degree, with only a small contribution coming from slightly deformed crystalline ice. To describe the inelastic spectra of DNA hydration water, we exploited a phenomenological model already applied in similar disordered systems, such as bulk water (Sacchetti et al. Phys. Rev. E2004, 69, 061203; Petrillo et al. Phys. Rev. E2000, 62, 3611-3618; Sette et al. Phys. Rev. Lett.1996, 77, 83-86) and protein hydration water (Orecchini et al. J. Am. Chem. Soc.2009, 131, 4664-4669). Over the low-energy range, the coherent dynamics of DNA hydration water is characterized by a branch at about 7.5 meV, a value slightly larger than that of bulk water. An additional mode in the energy range 20-35 meV is found, with a wavevector dependence seemingly connected with the structural features of amorphous ice. The ensemble of the results supports the glassy nature of DNA hydration water.

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Year:  2013        PMID: 23294006     DOI: 10.1021/jp3105437

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  3 in total

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Journal:  Int J Mol Sci       Date:  2022-05-04       Impact factor: 6.208

2.  Protein/Ice Interaction: High-Resolution Synchrotron X-ray Diffraction Differentiates Pharmaceutical Proteins from Lysozyme.

Authors:  Bakul Bhatnagar; Boris Zakharov; Alexander Fisyuk; Xin Wen; Fawziya Karim; Kimberly Lee; Yurii Seryotkin; Mashikoane Mogodi; Andy Fitch; Elena Boldyreva; Anastasia Kostyuchenko; Evgenyi Shalaev
Journal:  J Phys Chem B       Date:  2019-07-01       Impact factor: 3.466

3.  A New Look into the Mode of Action of Metal-Based Anticancer Drugs.

Authors:  M Paula M Marques; Ana L M Batista de Carvalho; Adriana P Mamede; Asha Dopplapudi; Svemir Rudić; Madhusudan Tyagi; Victoria Garcia Sakai; Luís A E Batista de Carvalho
Journal:  Molecules       Date:  2020-01-07       Impact factor: 4.411

  3 in total

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