Literature DB >> 23286164

Using multiparametric data with missing features for learning patterns of pathology.

Madhura Ingalhalikar1, William A Parker, Luke Bloy, Timothy P L Roberts, Ragini Verma.   

Abstract

The paper presents a method for learning multimodal classifiers from datasets in which not all subjects have data from all modalities. Usually, subjects with a severe form of pathology are the ones failing to satisfactorily complete the study, especially when it consists of multiple imaging modalities. A classifier capable of handling subjects with unequal numbers of modalities prevents discarding any subjects, as is traditionally done, thereby broadening the scope of the classifier to more severe pathology. It also allows design of the classifier to include as much of the available information as possible and facilitates testing of subjects with missing modalities over the constructed classifier. The presented method employs an ensemble based approach where several subsets of complete data are formed and trained using individual classifiers., The output from these classifiers is fused using a weighted aggregation step giving an optimal probabilistic score for each subject. The method is applied to a spatio-temporal dataset for autism spectrum disorders (ASD) (96 patients with ASD and 42 typically developing controls) that consists of functional features from magnetoencephalography (MEG) and structural connectivity features from diffusion tensor imaging (DTI). A clear distinction between ASD and controls is obtained with an average 5-fold accuracy of 83.3% and testing accuracy of 88.4%. The fusion classifier performance is superior to the classification achieved using single modalities as well as multimodal classifier using only complete data (78.3%). The presented multimodal classifier framework is applicable to all modality combinations.

Entities:  

Mesh:

Year:  2012        PMID: 23286164      PMCID: PMC4023481          DOI: 10.1007/978-3-642-33454-2_58

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  10 in total

1.  Regularized tensor factorization for multi-modality medical image classification.

Authors:  Nematollah Batmanghelich; Aoyan Dong; Ben Taskar; Christos Davatzikos
Journal:  Med Image Comput Comput Assist Interv       Date:  2011

2.  Classification with Incomplete Data Using Dirichlet Process Priors.

Authors:  Chunping Wang; Xuejun Liao; Lawrence Carin; David B Dunson
Journal:  J Mach Learn Res       Date:  2010-03-01       Impact factor: 3.654

3.  COMPARE: classification of morphological patterns using adaptive regional elements.

Authors:  Yong Fan; Dinggang Shen; Ruben C Gur; Raquel E Gur; Christos Davatzikos
Journal:  IEEE Trans Med Imaging       Date:  2007-01       Impact factor: 10.048

4.  Magnetoencephalography identifies rapid temporal processing deficit in autism and language impairment.

Authors:  Janis E Oram Cardy; Elissa J Flagg; Wendy Roberts; Jessica Brian; Timothy P L Roberts
Journal:  Neuroreport       Date:  2005-03-15       Impact factor: 1.837

5.  Selection-Fusion Approach for Classification of Datasets with Missing Values.

Authors:  Mostafa Ghannad-Rezaie; Hamid Soltanian-Zadeh; Hao Ying; Ming Dong
Journal:  Pattern Recognit       Date:  2010-06-01       Impact factor: 7.740

6.  Multimodal classification of Alzheimer's disease and mild cognitive impairment.

Authors:  Daoqiang Zhang; Yaping Wang; Luping Zhou; Hong Yuan; Dinggang Shen
Journal:  Neuroimage       Date:  2011-01-12       Impact factor: 6.556

7.  Diffusion based abnormality markers of pathology: toward learned diagnostic prediction of ASD.

Authors:  Madhura Ingalhalikar; Drew Parker; Luke Bloy; Timothy P L Roberts; Ragini Verma
Journal:  Neuroimage       Date:  2011-05-14       Impact factor: 6.556

8.  White matter atlas generation using HARDI based automated parcellation.

Authors:  Luke Bloy; Madhura Ingalhalikar; Harini Eavani; Robert T Schultz; Timothy P L Roberts; Ragini Verma
Journal:  Neuroimage       Date:  2011-08-26       Impact factor: 6.556

9.  Atlas-based whole brain white matter analysis using large deformation diffeomorphic metric mapping: application to normal elderly and Alzheimer's disease participants.

Authors:  Kenichi Oishi; Andreia Faria; Hangyi Jiang; Xin Li; Kazi Akhter; Jiangyang Zhang; John T Hsu; Michael I Miller; Peter C M van Zijl; Marilyn Albert; Constantine G Lyketsos; Roger Woods; Arthur W Toga; G Bruce Pike; Pedro Rosa-Neto; Alan Evans; John Mazziotta; Susumu Mori
Journal:  Neuroimage       Date:  2009-06       Impact factor: 6.556

10.  MEG detection of delayed auditory evoked responses in autism spectrum disorders: towards an imaging biomarker for autism.

Authors:  Timothy P L Roberts; Sarah Y Khan; Mike Rey; Justin F Monroe; Katelyn Cannon; Lisa Blaskey; Sarah Woldoff; Saba Qasmieh; Mike Gandal; Gwen L Schmidt; Deborah M Zarnow; Susan E Levy; J Christopher Edgar
Journal:  Autism Res       Date:  2010-02       Impact factor: 5.216

  10 in total
  9 in total

1.  View-aligned hypergraph learning for Alzheimer's disease diagnosis with incomplete multi-modality data.

Authors:  Mingxia Liu; Jun Zhang; Pew-Thian Yap; Dinggang Shen
Journal:  Med Image Anal       Date:  2016-11-16       Impact factor: 8.545

2.  Feature fusion via hierarchical supervised local CCA for diagnosis of autism spectrum disorder.

Authors:  Feng Zhao; Lishan Qiao; Feng Shi; Pew-Thian Yap; Dinggang Shen
Journal:  Brain Imaging Behav       Date:  2017-08       Impact factor: 3.978

3.  Neurodegenerative disease diagnosis using incomplete multi-modality data via matrix shrinkage and completion.

Authors:  Kim-Han Thung; Chong-Yaw Wee; Pew-Thian Yap; Dinggang Shen
Journal:  Neuroimage       Date:  2014-01-27       Impact factor: 6.556

4.  Multi-Hypergraph Learning for Incomplete Multimodality Data.

Authors:  Mingxia Liu; Yue Gao; Pew-Thian Yap; Dinggang Shen
Journal:  IEEE J Biomed Health Inform       Date:  2017-07-26       Impact factor: 5.772

5.  Diagnosis of autism spectrum disorders using regional and interregional morphological features.

Authors:  Chong-Yaw Wee; Li Wang; Feng Shi; Pew-Thian Yap; Dinggang Shen
Journal:  Hum Brain Mapp       Date:  2013-11-06       Impact factor: 5.038

6.  Conversion and time-to-conversion predictions of mild cognitive impairment using low-rank affinity pursuit denoising and matrix completion.

Authors:  Kim-Han Thung; Pew-Thian Yap; Ehsan Adeli; Seong-Whan Lee; Dinggang Shen
Journal:  Med Image Anal       Date:  2018-01-31       Impact factor: 8.545

7.  Intrinsic functional brain architecture derived from graph theoretical analysis in the human fetus.

Authors:  Moriah E Thomason; Jesse A Brown; Maya T Dassanayake; Rupal Shastri; Hilary A Marusak; Edgar Hernandez-Andrade; Lami Yeo; Swati Mody; Susan Berman; Sonia S Hassan; Roberto Romero
Journal:  PLoS One       Date:  2014-05-01       Impact factor: 3.240

Review 8.  The Broad Autism (Endo)Phenotype: Neurostructural and Neurofunctional Correlates in Parents of Individuals with Autism Spectrum Disorders.

Authors:  Lucia Billeci; Sara Calderoni; Eugenia Conti; Camilla Gesi; Claudia Carmassi; Liliana Dell'Osso; Giovanni Cioni; Filippo Muratori; Andrea Guzzetta
Journal:  Front Neurosci       Date:  2016-07-22       Impact factor: 4.677

Review 9.  Progress and roadblocks in the search for brain-based biomarkers of autism and attention-deficit/hyperactivity disorder.

Authors:  L Q Uddin; D R Dajani; W Voorhies; H Bednarz; R K Kana
Journal:  Transl Psychiatry       Date:  2017-08-22       Impact factor: 6.222

  9 in total

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