| Literature DB >> 23285038 |
Valeria Micale1, Salvatore Campo, Angela D'Ascola, M Cristina Guerrera, M Beatrice Levanti, Antonino Germanà, Ugo Muglia.
Abstract
BACKGROUND: The peptide hormone cholecystokinin (CCK), secreted by the midgut, plays a key role in digestive physiology of vertebrates including teleosts, by stimulating pancreatic secretion, gut motility, and gallbladder contraction, as well as by delaying gastric emptying. Moreover, CCK is involved in the regulation of food intake and satiation. Secretion of CCK by the hindgut is controversial, and its biological activity remains to be elucidated. The present paper addresses the regional distribution of intestinal CCK in the white sea bream, Diplodus sargus, as well as the possible involvement of hindgut CCK in digestive processes. METHODOLOGY/PRINCIPALEntities:
Mesh:
Substances:
Year: 2012 PMID: 23285038 PMCID: PMC3527491 DOI: 10.1371/journal.pone.0052428
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Extracted digestive tract from an adult white sea bream, D. sargus.
Intestinal segments sampled for immunohistochemistry, Western blot, and qPCR are indicated on the figure.
Name and nucleotide sequence of primers used for white sea bream CCK-1, CCK-2, and β-actin nucleotide sequence identification.
| NAME | GENE SPECIFIC PRIMERS |
| CCK-1 1_Reverse 5′-RACE |
|
| CCK-1 2_Reverse 5′-RACE |
|
| CCK-1 3_Reverse 5′-RACE |
|
| CCK-1 1_Sense 3′-RACE |
|
| CCK-1 2_Sense 3′-RACE |
|
| CCK-2 1_Reverse 5′-RACE |
|
| CCK-2 2_Reverse 5′-RACE |
|
| CCK-2 3_Reverse 5′-RACE |
|
| CCK-2 1_Sense 3′-RACE |
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| CCK-2 2_Sense 3′-RACE |
|
| β-actin 1_Sense (Direct Amplification) |
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| β-actin 1_Reverse (Direct Amplification) |
|
Taxa, species, and CCK protein sequences investigated in the present study.
| Taxon and Species | Proteins | AccessionNumber/Reference |
| Outgroup | ||
|
| CCK | CAG47022 |
|
| CCK | CAB62255 |
|
| CCK | AAM77662 |
|
| CCK | CAA87639 |
|
| CCK | ACH42756 |
|
| CCK | CAB94727 |
|
| ||
|
| CCK | BAD01500 |
|
| CCK-1 | BAA23734 |
| CCK-2 | BAC44892 | |
|
| CCK | BAE16613 |
|
| CCK | ACM09682 |
|
| CCK | ACH42757 |
|
| CCK-1 | NP_001117817 |
| CCK-L | CAA09907 | |
| CCK-T | CAA09906 | |
| CCK-N | NP_001118083 | |
|
| CCK | BE212760 |
|
| CCK-1 | BAC44894 |
| CCK-2 | BAC44895 | |
|
| CCK | AAQ17201 |
|
| CCK | ADG64736 |
|
| CCK-V | XP_002665661 |
| CCK | XP_001346140 | |
|
| CCK | ACF04738 |
|
| CCK | O93464 |
|
| CCK-1 | xd27fq/ENSORLP00000007034 |
|
| 37pxvj/ENSORLP00000007487 | |
|
| CCK-1 | jm6771/ENSTRUP00000034252 |
|
| tdz3j7/ENSTRUP00000004505 |
Ensembl Medaka ver. 50.1f.
°Ensembl Fugu ver. 50.4j.
Name and nucleotide sequence of primers and probes used for mRNA expression analysis of white sea bream CCK-1, CCK-2, and β-actin by qPCR.
| NAME | PRIMERS AND PROBES SEQUENCES |
| CCK-1 Sense REAL TIME |
|
| CCK-1 Reverse REAL TIME |
|
| CCK-1 Probe REAL TIME |
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| CCK-2 Sense REAL TIME |
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| CCK-2 Reverse REAL TIME |
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| CCK-2 Probe REAL TIME |
|
| β-actinSense REAL TIME |
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| β-actinReverse REAL TIME |
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| β-actinProbe REAL TIME |
|
Figure 2Alignment of CCK amino acid sequences from various teleost fish and human by CLUSTAL-W tool.
Consensus key: (*) single, fully conserved residue; (:) conservation of strong groups; (.) conservation of weak groups; () no consensus. The octapeptide is in bold characters. GenBank Accession Nos. are as reported in Table 2.
Figure 3Phylogenetic analysis of CCK protein sequences from D. sargus and various species.
The best phylogenetic tree was obtained by Bayesian Markov Chain Monte Carlo (MCMC) method, using the JTT substitution model for 106 replicates, after discarding the first 25% obtained samples. The scale bar indicates the substitution rate per site. Numbers at nodes indicate posterior probability (range 0–1). Protein IDs (GenBank Accession Nos) are as reported in Table 2.