Literature DB >> 23284496

(+)-(1S,5R,6R)-6-[(S)-1-Hy-droxy-2-(meth-oxy-meth-yloxy)eth-yl]-1-methyl-3-trichloro-methyl-2-aza-4,7-dioxa-bicyclo-[3.3.0]oct-2-en-8-one.

Takeshi Oishi1, Hiroki Oishi, Syun Tsuzaki, Takaaki Sato, Noritaka Chida.   

Abstract

In the title compound, C(11)H(14)Cl(3)NO(6), the fused five-membered oxazoline and tetra-hydro-furan rings are essentially planar with maximum deviations of 0.069 (1) and 0.031 (1) Å, respectively, and make a dihedral angle of 64.23 (11)° with each other. In the crystal, mol-ecules are linked by O-H⋯O and C-H⋯O hydrogen bonds, forming chains along the b-axis direction. Further C-H⋯O hydrogen bonds are observed between the chains.

Entities:  

Year:  2012        PMID: 23284496      PMCID: PMC3515276          DOI: 10.1107/S1600536812042912

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis, see: Oishi et al. (2012 ▶). For the isolation of sphingofungins, see: VanMiddlesworth, Giacobbe et al. (1992 ▶); VanMiddlesworth, Dufresne et al. (1992 ▶); Horn et al. (1992 ▶).

Experimental

Crystal data

C11H14Cl3NO6 M = 362.58 Monoclinic, a = 8.9311 (7) Å b = 6.0283 (4) Å c = 13.8694 (10) Å β = 99.699 (2)° V = 736.05 (9) Å3 Z = 2 Mo Kα radiation μ = 0.65 mm−1 T = 90 K 0.50 × 0.25 × 0.16 mm

Data collection

Bruker D8 goniometer diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2012 ▶) T min = 0.738, T max = 0.904 6662 measured reflections 2364 independent reflections 2291 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.069 S = 1.34 2364 reflections 193 parameters 1 restraint H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.22 e Å−3 Absolute structure: Flack (1983 ▶), 947 Friedel pairs Flack parameter: 0.01 (5) Data collection: APEX2 (Bruker, 2012 ▶); cell refinement: SAINT (Bruker, 2012 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: SHELXL97. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812042912/is5207sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042912/is5207Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042912/is5207Isup3.cdx Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042912/is5207Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H14Cl3NO6Dx = 1.636 Mg m3
Mr = 362.58Melting point: 409.7 K
Monoclinic, P21Mo Kα radiation, λ = 0.71073 Å
a = 8.9311 (7) ÅCell parameters from 5778 reflections
b = 6.0283 (4) Åθ = 2.3–25.1°
c = 13.8694 (10) ŵ = 0.65 mm1
β = 99.699 (2)°T = 90 K
V = 736.05 (9) Å3Prism, colourless
Z = 20.50 × 0.25 × 0.16 mm
F(000) = 372
Bruker D8 goniometer diffractometer2364 independent reflections
Radiation source: fine-focus sealed tube2291 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
Detector resolution: 10.4167 pixels mm-1θmax = 25.1°, θmin = 2.3°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Bruker, 2012)k = −7→6
Tmin = 0.738, Tmax = 0.904l = −16→16
6662 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H-atom parameters constrained
wR(F2) = 0.069w = 1/[σ2(Fo2) + (0.0338P)2] where P = (Fo2 + 2Fc2)/3
S = 1.34(Δ/σ)max = 0.001
2364 reflectionsΔρmax = 0.37 e Å3
193 parametersΔρmin = −0.22 e Å3
1 restraintAbsolute structure: Flack (1983), 947 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.01 (5)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.7195 (2)0.5236 (4)0.43062 (15)0.0152 (5)
N20.7869 (2)0.3750 (3)0.36335 (12)0.0139 (4)
C30.8554 (2)0.5035 (4)0.31378 (15)0.0134 (5)
O40.85179 (17)0.7255 (3)0.32714 (10)0.0156 (3)
C50.7464 (2)0.7590 (4)0.39563 (15)0.0148 (5)
H50.79280.85500.45160.018*
C60.5893 (2)0.8481 (4)0.34831 (15)0.0142 (5)
H60.56520.98250.38510.017*
O70.48036 (16)0.6720 (3)0.36046 (10)0.0162 (4)
C80.5464 (2)0.4965 (4)0.40903 (15)0.0142 (5)
O90.47385 (18)0.3412 (3)0.42994 (10)0.0181 (4)
C100.5688 (3)0.9041 (4)0.24039 (15)0.0161 (5)
H100.64641.01850.23160.019*
C110.4125 (3)1.0049 (4)0.20566 (15)0.0165 (5)
H11A0.33350.90270.22160.020*
H11B0.40391.14620.24080.020*
O120.59596 (18)0.7153 (3)0.18539 (11)0.0208 (4)
H120.51320.65200.16420.031*
O130.38660 (19)1.0460 (3)0.10212 (11)0.0205 (4)
C140.4558 (3)1.2396 (4)0.07599 (16)0.0192 (5)
H14A0.45771.23650.00490.023*
H14B0.56221.24370.11050.023*
O150.38097 (18)1.4326 (3)0.09848 (11)0.0195 (4)
C160.2416 (3)1.4735 (5)0.03432 (17)0.0256 (6)
H16A0.16631.36250.04560.038*
H16B0.25821.4641−0.03360.038*
H16C0.20451.62200.04680.038*
C170.7852 (3)0.4676 (4)0.53576 (15)0.0194 (5)
H17A0.89620.47930.54540.029*
H17B0.75640.31590.55030.029*
H17C0.74550.57140.57960.029*
C180.9561 (2)0.4317 (4)0.24145 (15)0.0155 (5)
Cl190.95353 (6)0.14171 (10)0.22820 (4)0.02283 (16)
Cl201.14459 (6)0.51691 (10)0.28730 (4)0.02415 (16)
Cl210.89393 (7)0.55359 (12)0.12613 (4)0.03251 (19)
U11U22U33U12U13U23
C10.0208 (12)0.0143 (12)0.0113 (10)0.0026 (11)0.0052 (9)−0.0013 (10)
N20.0157 (10)0.0130 (10)0.0135 (8)0.0008 (8)0.0040 (8)0.0008 (8)
C30.0127 (11)0.0159 (12)0.0107 (10)−0.0001 (10)−0.0005 (8)−0.0026 (10)
O40.0157 (8)0.0130 (8)0.0195 (8)−0.0007 (7)0.0071 (6)0.0001 (7)
C50.0158 (11)0.0172 (13)0.0122 (10)0.0006 (10)0.0050 (8)−0.0015 (11)
C60.0191 (12)0.0100 (11)0.0147 (10)−0.0041 (10)0.0063 (9)−0.0026 (10)
O70.0162 (8)0.0161 (9)0.0174 (8)−0.0006 (7)0.0061 (6)0.0032 (7)
C80.0219 (12)0.0125 (12)0.0094 (10)0.0023 (11)0.0065 (9)−0.0024 (10)
O90.0228 (9)0.0154 (9)0.0174 (7)−0.0033 (7)0.0074 (7)0.0001 (7)
C100.0195 (12)0.0159 (12)0.0143 (10)−0.0009 (10)0.0064 (9)−0.0022 (10)
C110.0216 (11)0.0175 (13)0.0109 (10)−0.0012 (10)0.0041 (9)0.0026 (10)
O120.0208 (9)0.0239 (9)0.0179 (8)0.0014 (8)0.0035 (7)−0.0072 (8)
O130.0294 (9)0.0177 (9)0.0135 (8)−0.0011 (8)0.0010 (7)0.0023 (7)
C140.0231 (13)0.0195 (12)0.0164 (11)0.0038 (11)0.0071 (9)0.0027 (11)
O150.0219 (9)0.0171 (8)0.0194 (8)0.0012 (7)0.0038 (7)0.0004 (8)
C160.0234 (13)0.0262 (15)0.0257 (12)0.0023 (11)−0.0005 (10)−0.0014 (12)
C170.0190 (12)0.0231 (14)0.0168 (11)0.0052 (10)0.0048 (9)0.0037 (11)
C180.0158 (12)0.0159 (12)0.0151 (11)−0.0009 (10)0.0032 (9)−0.0003 (10)
Cl190.0254 (3)0.0168 (3)0.0290 (3)−0.0034 (3)0.0126 (3)−0.0074 (3)
Cl200.0162 (3)0.0259 (3)0.0317 (3)−0.0044 (3)0.0079 (2)−0.0094 (3)
Cl210.0345 (4)0.0461 (5)0.0202 (3)0.0192 (3)0.0139 (3)0.0130 (3)
C1—N21.491 (3)C11—H11A0.9900
C1—C171.515 (3)C11—H11B0.9900
C1—C51.532 (3)O12—H120.8400
C1—C81.533 (3)O13—C141.396 (3)
N2—C31.260 (3)C14—O151.403 (3)
C3—O41.352 (3)C14—H14A0.9900
C3—C181.519 (3)C14—H14B0.9900
O4—C51.459 (3)O15—C161.424 (3)
C5—C61.542 (3)C16—H16A0.9800
C5—H51.0000C16—H16B0.9800
C6—O71.468 (3)C16—H16C0.9800
C6—C101.515 (3)C17—H17A0.9800
C6—H61.0000C17—H17B0.9800
O7—C81.337 (3)C17—H17C0.9800
C8—O91.202 (3)C18—Cl191.757 (3)
C10—O121.414 (3)C18—Cl211.763 (2)
C10—C111.524 (3)C18—Cl201.773 (2)
C10—H101.0000Cl19—O4i3.0697 (17)
C11—O131.437 (2)Cl20—O7ii3.1419 (16)
N2—C1—C17109.67 (18)O13—C11—H11A109.3
N2—C1—C5104.89 (16)C10—C11—H11A109.3
C17—C1—C5117.1 (2)O13—C11—H11B109.3
N2—C1—C8108.29 (17)C10—C11—H11B109.3
C17—C1—C8112.22 (18)H11A—C11—H11B107.9
C5—C1—C8104.10 (18)C10—O12—H12109.5
C3—N2—C1104.83 (19)C14—O13—C11113.55 (17)
N2—C3—O4120.6 (2)O13—C14—O15112.79 (17)
N2—C3—C18125.5 (2)O13—C14—H14A109.0
O4—C3—C18113.8 (2)O15—C14—H14A109.0
C3—O4—C5105.01 (17)O13—C14—H14B109.0
O4—C5—C1103.34 (17)O15—C14—H14B109.0
O4—C5—C6114.30 (16)H14A—C14—H14B107.8
C1—C5—C6106.11 (18)C14—O15—C16113.79 (18)
O4—C5—H5110.9O15—C16—H16A109.5
C1—C5—H5110.9O15—C16—H16B109.5
C6—C5—H5110.9H16A—C16—H16B109.5
O7—C6—C10107.59 (17)O15—C16—H16C109.5
O7—C6—C5105.81 (18)H16A—C16—H16C109.5
C10—C6—C5116.62 (18)H16B—C16—H16C109.5
O7—C6—H6108.9C1—C17—H17A109.5
C10—C6—H6108.9C1—C17—H17B109.5
C5—C6—H6108.9H17A—C17—H17B109.5
C8—O7—C6112.65 (16)C1—C17—H17C109.5
O9—C8—O7121.9 (2)H17A—C17—H17C109.5
O9—C8—C1127.1 (2)H17B—C17—H17C109.5
O7—C8—C1111.04 (19)C3—C18—Cl19110.75 (17)
O12—C10—C11112.46 (18)C3—C18—Cl21110.46 (16)
O12—C10—C6110.51 (19)Cl19—C18—Cl21108.87 (12)
C11—C10—C6110.68 (17)C3—C18—Cl20108.21 (15)
O12—C10—H10107.7Cl19—C18—Cl20108.69 (13)
C11—C10—H10107.7Cl21—C18—Cl20109.84 (12)
C6—C10—H10107.7C18—Cl19—O4i139.97 (8)
O13—C11—C10111.67 (17)C18—Cl20—O7ii177.84 (8)
C17—C1—N2—C3−118.3 (2)C17—C1—C8—O9−47.7 (3)
C5—C1—N2—C38.3 (2)C5—C1—C8—O9−175.3 (2)
C8—C1—N2—C3119.0 (2)N2—C1—C8—O7−105.6 (2)
C1—N2—C3—O4−1.7 (3)C17—C1—C8—O7133.2 (2)
C1—N2—C3—C18173.61 (19)C5—C1—C8—O75.6 (2)
N2—C3—O4—C5−6.0 (3)O7—C6—C10—O12−59.9 (2)
C18—C3—O4—C5178.18 (16)C5—C6—C10—O1258.7 (3)
C3—O4—C5—C110.3 (2)O7—C6—C10—C1165.4 (2)
C3—O4—C5—C6−104.5 (2)C5—C6—C10—C11−176.0 (2)
N2—C1—C5—O4−11.3 (2)O12—C10—C11—O13−52.1 (3)
C17—C1—C5—O4110.49 (19)C6—C10—C11—O13−176.20 (19)
C8—C1—C5—O4−125.02 (17)C10—C11—O13—C14−79.6 (2)
N2—C1—C5—C6109.24 (18)C11—O13—C14—O15−74.1 (2)
C17—C1—C5—C6−128.9 (2)O13—C14—O15—C16−74.3 (2)
C8—C1—C5—C6−4.4 (2)N2—C3—C18—Cl194.6 (3)
O4—C5—C6—O7115.31 (19)O4—C3—C18—Cl19−179.78 (15)
C1—C5—C6—O72.1 (2)N2—C3—C18—Cl21125.3 (2)
O4—C5—C6—C10−4.2 (3)O4—C3—C18—Cl21−59.1 (2)
C1—C5—C6—C10−117.4 (2)N2—C3—C18—Cl20−114.4 (2)
C10—C6—O7—C8126.83 (19)O4—C3—C18—Cl2061.2 (2)
C5—C6—O7—C81.5 (2)C3—C18—Cl19—O4i−12.9 (2)
C6—O7—C8—O9176.28 (19)Cl21—C18—Cl19—O4i−134.58 (9)
C6—O7—C8—C1−4.6 (2)Cl20—C18—Cl19—O4i105.81 (13)
N2—C1—C8—O973.5 (3)
D—H···AD—HH···AD···AD—H···A
O12—H12···O15i0.841.902.695 (2)157
C6—H6···O9iii1.002.433.402 (3)164
C17—H17C···O9iv0.982.533.320 (3)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O12—H12⋯O15i 0.841.902.695 (2)157
C6—H6⋯O9ii 1.002.433.402 (3)164
C17—H17C⋯O9iii 0.982.533.320 (3)137

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  Sphingofungins E and F: novel serinepalmitoyl transferase inhibitors from Paecilomyces variotii.

Authors:  W S Horn; J L Smith; G F Bills; S L Raghoobar; G L Helms; M B Kurtz; J A Marrinan; B R Frommer; R A Thornton; S M Mandala
Journal:  J Antibiot (Tokyo)       Date:  1992-10       Impact factor: 2.649

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Sphingofungins A, B, C, and D; a new family of antifungal agents. I. Fermentation, isolation, and biological activity.

Authors:  F VanMiddlesworth; R A Giacobbe; M Lopez; G Garrity; J A Bland; K Bartizal; R A Fromtling; J Polishook; M Zweerink; A M Edison
Journal:  J Antibiot (Tokyo)       Date:  1992-06       Impact factor: 2.649

  3 in total

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