Literature DB >> 23284484

3-tert-Butyl-1-(3-nitro-phen-yl)-1H-pyrazol-5-amine.

Simón Hernández-Ortega1, Fernando Cuenú-Cabezas, Rodrigo Abonia-González, Armando Cabrera-Ortiz.   

Abstract

In the title compound, C(13)H(16)N(4)O(2), the pyrazole ring forms a dihedral angle of 50.61 (6)° with the 3-nitro-phenyl ring. The plane of the nitro group is twisted by 6.8 (7)° out of the plane of the phenyl ring. In the crystal, the mol-ecules are linked by N-H⋯N and N-H⋯O hydrogen bonds, forming sheets in the bc plane. In addition, a weak C-H⋯N inter-action is observed.

Entities:  

Year:  2012        PMID: 23284484      PMCID: PMC3515264          DOI: 10.1107/S1600536812042791

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to pyrazole-based ligands, see; Ahmed et al. (2005 ▶); Abonia et al. (2002 ▶, 2004 ▶, 2010 ▶); Guerrero et al. (2009 ▶); Quiroga et al. (2008 ▶); Schutznerová, et al. (2012 ▶). For structure of an isomer of the title compound, see: Low et al. (2004 ▶).

Experimental

Crystal data

C13H16N4O2 M = 260.30 Monoclinic, a = 11.9421 (14) Å b = 9.6419 (11) Å c = 11.7694 (13) Å β = 93.504 (2)° V = 1352.6 (3) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 298 K 0.46 × 0.36 × 0.32 mm

Data collection

Bruker SMART APEX CCD area-detector diffractometer 14529 measured reflections 2486 independent reflections 2036 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.115 S = 1.05 2486 reflections 181 parameters 2 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.17 e Å−3 Data collection: SMART (Bruker, 1999 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812042791/bt6847sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042791/bt6847Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H16N4O2F(000) = 552
Mr = 260.30Dx = 1.278 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 7587 reflections
a = 11.9421 (14) Åθ = 2.7–25.3°
b = 9.6419 (11) ŵ = 0.09 mm1
c = 11.7694 (13) ÅT = 298 K
β = 93.504 (2)°Prism, orange
V = 1352.6 (3) Å30.46 × 0.36 × 0.32 mm
Z = 4
Bruker SMART APEX CCD area-detector diffractometer2036 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.044
Graphite monochromatorθmax = 25.4°, θmin = 2.7°
Detector resolution: 0.83 pixels mm-1h = −14→14
ω scansk = −11→11
14529 measured reflectionsl = −14→14
2486 independent reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.115H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0644P)2 + 0.1233P] where P = (Fo2 + 2Fc2)/3
2486 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.17 e Å3
2 restraintsΔρmin = −0.17 e Å3
Geometry. All e.s.d.'s (except the those in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.61664 (14)−0.30475 (15)0.45577 (16)0.1090 (6)
O20.76468 (15)−0.18160 (16)0.45837 (14)0.1006 (5)
N10.71780 (9)0.17992 (11)0.75434 (9)0.0403 (3)
N20.78018 (9)0.26705 (11)0.68907 (9)0.0426 (3)
N30.67228 (15)−0.20551 (15)0.48900 (13)0.0686 (4)
N40.68987 (11)0.12825 (14)0.94996 (10)0.0516 (3)
H4A0.7163 (13)0.1491 (17)1.0213 (9)0.062*
H4B0.6699 (13)0.0411 (11)0.9321 (14)0.062*
C30.84041 (11)0.34268 (13)0.76494 (11)0.0401 (3)
C40.81984 (11)0.30418 (14)0.87650 (11)0.0433 (3)
H40.85230.34210.94330.052*
C50.74255 (11)0.19985 (13)0.86760 (11)0.0400 (3)
C60.91855 (12)0.45492 (15)0.72699 (13)0.0488 (4)
C70.99208 (17)0.3989 (2)0.63582 (17)0.0768 (6)
H7A1.03740.32410.66690.115*
H7B1.03980.47160.61100.115*
H7C0.94530.36570.57230.115*
C80.85048 (16)0.57837 (16)0.67990 (16)0.0698 (5)
H8A0.80510.55000.61380.105*
H8B0.90050.65090.65940.105*
H8C0.80300.61190.73680.105*
C90.99367 (15)0.50386 (18)0.82913 (16)0.0657 (5)
H9A0.94830.54540.88450.098*
H9B1.04640.57090.80440.098*
H9C1.03340.42600.86260.098*
C110.64947 (11)0.07495 (13)0.70143 (11)0.0413 (3)
C120.69297 (12)−0.00946 (14)0.62034 (12)0.0458 (4)
H120.76580.00270.59850.055*
C130.62517 (13)−0.11245 (14)0.57271 (12)0.0490 (4)
C140.51684 (14)−0.13283 (15)0.60126 (14)0.0555 (4)
H140.4727−0.20230.56680.067*
C150.47534 (14)−0.04795 (17)0.68205 (15)0.0598 (4)
H150.4022−0.06030.70320.072*
C160.54076 (12)0.05548 (16)0.73219 (13)0.0535 (4)
H160.51170.11240.78690.064*
U11U22U33U12U13U23
O10.1062 (12)0.0705 (9)0.1473 (15)−0.0008 (8)−0.0181 (10)−0.0588 (10)
O20.1094 (13)0.0912 (11)0.1050 (12)−0.0042 (9)0.0366 (10)−0.0347 (9)
N10.0438 (6)0.0374 (6)0.0390 (6)−0.0066 (5)−0.0035 (5)0.0012 (5)
N20.0464 (7)0.0400 (6)0.0408 (6)−0.0063 (5)−0.0029 (5)0.0030 (5)
N30.0837 (11)0.0507 (8)0.0697 (9)0.0057 (8)−0.0079 (8)−0.0137 (7)
N40.0619 (8)0.0505 (7)0.0418 (7)−0.0070 (6)−0.0016 (6)0.0068 (6)
C30.0411 (7)0.0346 (7)0.0435 (7)0.0009 (6)−0.0056 (6)0.0008 (6)
C40.0487 (8)0.0402 (7)0.0398 (7)−0.0025 (6)−0.0089 (6)−0.0019 (6)
C50.0429 (7)0.0370 (7)0.0393 (7)0.0041 (6)−0.0037 (6)0.0025 (5)
C60.0518 (8)0.0404 (7)0.0530 (8)−0.0076 (6)−0.0062 (7)0.0043 (6)
C70.0860 (13)0.0648 (11)0.0827 (13)−0.0206 (10)0.0292 (11)0.0050 (10)
C80.0834 (12)0.0428 (9)0.0797 (12)−0.0123 (8)−0.0248 (10)0.0123 (8)
C90.0610 (10)0.0575 (10)0.0756 (11)−0.0208 (8)−0.0191 (9)0.0098 (8)
C110.0442 (8)0.0361 (7)0.0426 (7)−0.0044 (6)−0.0060 (6)0.0030 (6)
C120.0460 (8)0.0427 (8)0.0478 (8)−0.0014 (6)−0.0044 (6)0.0011 (6)
C130.0606 (9)0.0365 (7)0.0484 (8)0.0008 (7)−0.0084 (7)−0.0012 (6)
C140.0612 (10)0.0420 (8)0.0611 (9)−0.0129 (7)−0.0132 (8)0.0031 (7)
C150.0495 (9)0.0606 (10)0.0690 (10)−0.0154 (8)−0.0001 (8)−0.0018 (8)
C160.0494 (9)0.0525 (9)0.0585 (9)−0.0054 (7)0.0020 (7)−0.0050 (7)
O1—N31.2159 (19)C7—H7B0.9600
O2—N31.204 (2)C7—H7C0.9600
N1—C51.3613 (17)C8—H8A0.9600
N1—N21.3858 (15)C8—H8B0.9600
N1—C111.4198 (16)C8—H8C0.9600
N2—C31.3297 (17)C9—H9A0.9600
N3—C131.470 (2)C9—H9B0.9600
N4—C51.3735 (18)C9—H9C0.9600
N4—H4A0.901 (9)C11—C121.380 (2)
N4—H4B0.895 (9)C11—C161.382 (2)
C3—C41.4005 (19)C12—C131.378 (2)
C3—C61.5140 (19)C12—H120.9300
C4—C51.3650 (19)C13—C141.370 (2)
C4—H40.9300C14—C151.370 (2)
C6—C81.526 (2)C14—H140.9300
C6—C71.526 (2)C15—C161.377 (2)
C6—C91.530 (2)C15—H150.9300
C7—H7A0.9600C16—H160.9300
C5—N1—N2111.43 (10)C6—C8—H8A109.5
C5—N1—C11127.92 (11)C6—C8—H8B109.5
N2—N1—C11120.20 (10)H8A—C8—H8B109.5
C3—N2—N1104.32 (10)C6—C8—H8C109.5
O2—N3—O1123.17 (17)H8A—C8—H8C109.5
O2—N3—C13118.64 (15)H8B—C8—H8C109.5
O1—N3—C13118.17 (17)C6—C9—H9A109.5
C5—N4—H4A113.3 (11)C6—C9—H9B109.5
C5—N4—H4B115.7 (11)H9A—C9—H9B109.5
H4A—N4—H4B120.1 (16)C6—C9—H9C109.5
N2—C3—C4111.44 (12)H9A—C9—H9C109.5
N2—C3—C6120.78 (12)H9B—C9—H9C109.5
C4—C3—C6127.78 (12)C12—C11—C16120.04 (13)
C5—C4—C3106.26 (12)C12—C11—N1119.55 (12)
C5—C4—H4126.9C16—C11—N1120.40 (13)
C3—C4—H4126.9C13—C12—C11118.00 (13)
N1—C5—C4106.53 (11)C13—C12—H12121.0
N1—C5—N4122.60 (12)C11—C12—H12121.0
C4—C5—N4130.77 (13)C14—C13—C12122.92 (14)
C3—C6—C8109.90 (12)C14—C13—N3118.85 (14)
C3—C6—C7110.23 (12)C12—C13—N3118.23 (14)
C8—C6—C7109.71 (14)C15—C14—C13118.12 (14)
C3—C6—C9109.33 (12)C15—C14—H14120.9
C8—C6—C9108.57 (13)C13—C14—H14120.9
C7—C6—C9109.07 (14)C14—C15—C16120.67 (15)
C6—C7—H7A109.5C14—C15—H15119.7
C6—C7—H7B109.5C16—C15—H15119.7
H7A—C7—H7B109.5C15—C16—C11120.24 (14)
C6—C7—H7C109.5C15—C16—H16119.9
H7A—C7—H7C109.5C11—C16—H16119.9
H7B—C7—H7C109.5
D—H···AD—HH···AD···AD—H···A
N4—H4A···N2i0.90 (1)2.23 (1)3.1195 (17)172 (2)
N4—H4B···O1ii0.90 (1)2.39 (1)3.241 (2)160 (2)
C14—H14···N4iii0.932.543.403 (2)155
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4A⋯N2i 0.90 (1)2.23 (1)3.1195 (17)172 (2)
N4—H4B⋯O1ii 0.90 (1)2.39 (1)3.241 (2)160 (2)
C14—H14⋯N4iii 0.932.543.403 (2)155

Symmetry codes: (i) ; (ii) ; (iii) .

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4.  5-Amino-3-tert-butyl-1-(4-nitrophenyl)-1H-pyrazole forms hydrogen-bonded sheets of alternating R2(2)(20) and R6(6)(32) rings.

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Journal:  Acta Crystallogr C       Date:  2004-02-10       Impact factor: 1.172

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