Literature DB >> 23284478

3-Meth-oxy-2-[2-({[6-(trifluoro-meth-yl)pyridin-2-yl]-oxy}meth-yl)phen-yl]prop-2-enoic acid.

Rajni Kant1, Vivek K Gupta, Kamini Kapoor, Chetan S Shripanavar, Madhukar B Deshmukh, Kaushik Banerjee.   

Abstract

The title mol-ecule, C(17)H(14)F(3)NO(4), consists of two nearly planar fragments, viz. the 2-benzyl-oxypyridine (r.m.s. deviation 0.016 Å) and (E)-3-meth-oxy-prop2-enoic (r.m.s. deviation 0.004 Å) units, which form a dihedral angle of 84.19 (7)°. In the crystal, pairs of O-H⋯O hydrogen bonds link mol-ecules into dimers that are further connected by C-H⋯O and C-H⋯F inter-actions into (001) layers. In addition, π-π stacking inter-actions are observed within a layer between the pyridine and benzene rings [centroid-centroid distance = 3.768 (2) Å]. The F atoms of the trifluoro-methyl group are disordered over two sets of sites in a 0.53 (4):0.47 (4) ratio.

Entities:  

Year:  2012        PMID: 23284478      PMCID: PMC3515258          DOI: 10.1107/S1600536812042316

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is the acid metabolite of picoxystrobin [systematic name: methyl (E)-3-meth­oxy-2-{2-[6-(trifluoro­meth­yl)-2-pyridyl­oxymeth­yl]phen­yl}acrylate], a systemic fungicide with broad-spectrum bio-efficacy against various diseases of agricultural crops, see: Balba (2007 ▶); Ammermann et al. (2000 ▶). For a related structure, see: Kant et al. (2012 ▶).

Experimental

Crystal data

C17H14F3NO4 M = 353.29 Triclinic, a = 7.4701 (4) Å b = 10.1619 (5) Å c = 11.8219 (5) Å α = 94.721 (4)° β = 100.079 (4)° γ = 110.685 (5)° V = 816.42 (7) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.3 × 0.2 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.821, T max = 1.000 19533 measured reflections 3214 independent reflections 1988 reflections with I > 2σ(I) R int = 0.057

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.154 S = 1.04 3214 reflections 253 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.24 e Å−3 Δρmin = −0.40 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536812042316/gk2523sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042316/gk2523Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042316/gk2523Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C17H14F3NO4Z = 2
Mr = 353.29F(000) = 364
Triclinic, P1Dx = 1.437 Mg m3
Hall symbol: -P 1Melting point: 415 K
a = 7.4701 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.1619 (5) ÅCell parameters from 7723 reflections
c = 11.8219 (5) Åθ = 3.5–29.0°
α = 94.721 (4)°µ = 0.13 mm1
β = 100.079 (4)°T = 293 K
γ = 110.685 (5)°Plate, colourless
V = 816.42 (7) Å30.3 × 0.2 × 0.2 mm
Oxford Diffraction Xcalibur Sapphire3 diffractometer3214 independent reflections
Radiation source: fine-focus sealed tube1988 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.057
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.5°
ω scanh = −9→9
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −12→12
Tmin = 0.821, Tmax = 1.000l = −14→14
19533 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0666P)2 + 0.1912P] where P = (Fo2 + 2Fc2)/3
3214 reflections(Δ/σ)max < 0.001
253 parametersΔρmax = 0.24 e Å3
6 restraintsΔρmin = −0.40 e Å3
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.3119 (3)0.52862 (18)0.05675 (15)0.0505 (5)
N10.5088 (3)0.6809 (2)0.22310 (18)0.0441 (5)
O20.5218 (3)0.88494 (19)−0.22824 (18)0.0579 (6)
O3−0.0083 (3)0.84278 (19)−0.05459 (18)0.0578 (6)
O40.2235 (3)1.05406 (19)−0.05040 (19)0.0580 (6)
C10.1465 (4)0.9160 (3)−0.0804 (2)0.0403 (6)
C20.2512 (4)0.8515 (2)−0.1454 (2)0.0369 (6)
C30.4172 (4)0.9358 (3)−0.1689 (2)0.0437 (6)
H30.46221.0333−0.14340.052*
C40.1601 (3)0.6946 (2)−0.1883 (2)0.0358 (6)
C50.1822 (3)0.5959 (2)−0.1174 (2)0.0371 (6)
C60.0916 (4)0.4512 (3)−0.1611 (2)0.0436 (6)
H60.10520.3847−0.11420.052*
C7−0.0180 (4)0.4060 (3)−0.2733 (2)0.0502 (7)
H7−0.07810.3090−0.30160.060*
C8−0.0393 (4)0.5030 (3)−0.3437 (2)0.0529 (7)
H8−0.11360.4720−0.41940.063*
C90.0500 (4)0.6462 (3)−0.3013 (2)0.0477 (7)
H90.03630.7118−0.34920.057*
C100.3053 (4)0.6487 (3)0.0043 (2)0.0434 (6)
H10A0.43690.71140.00230.052*
H10B0.24860.70150.04910.052*
C110.4141 (4)0.5507 (3)0.1669 (2)0.0402 (6)
C120.6087 (4)0.6917 (3)0.3322 (2)0.0492 (7)
C130.6148 (4)0.5784 (3)0.3857 (2)0.0521 (7)
H130.68480.59180.46170.062*
C140.5133 (4)0.4432 (3)0.3227 (2)0.0519 (7)
H140.51420.36340.35580.062*
C150.4128 (4)0.4282 (3)0.2127 (2)0.0484 (7)
H150.34440.33840.16850.058*
C160.7204 (6)0.8399 (4)0.3923 (3)0.0835 (12)
C170.6970 (5)0.9862 (3)−0.2501 (3)0.0698 (9)
H17A0.66351.0336−0.31270.105*
H17B0.77900.9378−0.27090.105*
H17C0.76621.0551−0.18130.105*
F1110.591 (3)0.888 (3)0.429 (2)0.173 (7)0.47 (4)
F2220.854 (19)0.914 (18)0.334 (12)0.145 (5)0.47 (4)
F3330.848 (3)0.846 (2)0.4878 (15)0.115 (6)0.47 (4)
F11A0.6329 (17)0.9292 (9)0.3891 (12)0.105 (4)0.53 (4)
F22A0.845 (17)0.916 (16)0.331 (11)0.145 (5)0.53 (4)
F33A0.806 (3)0.847 (2)0.5018 (9)0.109 (5)0.53 (4)
H410.160 (6)1.088 (4)−0.012 (3)0.101 (13)*
U11U22U33U12U13U23
O10.0606 (12)0.0338 (10)0.0482 (11)0.0123 (9)0.0007 (9)0.0076 (8)
N10.0467 (13)0.0386 (12)0.0423 (13)0.0132 (10)0.0035 (10)0.0059 (10)
O20.0551 (12)0.0447 (11)0.0786 (14)0.0159 (10)0.0339 (11)0.0074 (10)
O30.0480 (12)0.0373 (10)0.0867 (15)0.0104 (9)0.0282 (11)−0.0015 (10)
O40.0540 (13)0.0321 (10)0.0882 (16)0.0125 (9)0.0301 (11)−0.0030 (10)
C10.0405 (15)0.0310 (13)0.0460 (15)0.0121 (12)0.0054 (12)0.0020 (11)
C20.0397 (14)0.0312 (13)0.0407 (14)0.0141 (12)0.0089 (11)0.0069 (11)
C30.0494 (16)0.0353 (14)0.0505 (16)0.0192 (13)0.0141 (13)0.0072 (12)
C40.0308 (13)0.0357 (13)0.0418 (14)0.0132 (11)0.0108 (11)0.0020 (11)
C50.0354 (14)0.0349 (14)0.0404 (14)0.0113 (11)0.0124 (11)0.0030 (11)
C60.0437 (15)0.0334 (14)0.0502 (16)0.0090 (12)0.0133 (13)0.0063 (12)
C70.0482 (17)0.0356 (15)0.0546 (18)0.0044 (13)0.0108 (13)−0.0078 (13)
C80.0487 (17)0.0549 (18)0.0455 (16)0.0164 (14)−0.0004 (13)−0.0070 (14)
C90.0508 (17)0.0488 (16)0.0450 (16)0.0235 (14)0.0052 (13)0.0059 (13)
C100.0475 (16)0.0315 (13)0.0454 (15)0.0088 (12)0.0079 (12)0.0068 (11)
C110.0397 (15)0.0384 (14)0.0426 (15)0.0132 (12)0.0111 (12)0.0098 (12)
C120.0532 (17)0.0442 (16)0.0490 (17)0.0199 (14)0.0048 (13)0.0062 (13)
C130.0547 (18)0.0600 (19)0.0454 (16)0.0266 (15)0.0069 (13)0.0147 (14)
C140.0585 (18)0.0467 (17)0.0587 (19)0.0244 (15)0.0173 (15)0.0213 (14)
C150.0537 (17)0.0372 (15)0.0540 (18)0.0161 (13)0.0123 (14)0.0086 (12)
C160.104 (3)0.058 (2)0.061 (2)0.014 (2)−0.017 (2)0.0047 (18)
C170.059 (2)0.068 (2)0.086 (2)0.0171 (17)0.0335 (18)0.0197 (18)
F1110.267 (14)0.108 (10)0.142 (12)0.136 (10)−0.061 (8)−0.060 (8)
F2220.162 (8)0.077 (4)0.114 (6)−0.033 (5)−0.012 (6)0.011 (3)
F3330.121 (8)0.060 (6)0.101 (9)0.002 (5)−0.067 (8)0.006 (7)
F11A0.144 (7)0.039 (3)0.111 (6)0.042 (5)−0.035 (4)−0.007 (3)
F22A0.162 (8)0.077 (4)0.114 (6)−0.033 (5)−0.012 (6)0.011 (3)
F33A0.166 (11)0.090 (7)0.046 (4)0.043 (7)−0.021 (5)−0.009 (4)
O1—C111.346 (3)C8—H80.9300
O1—C101.425 (3)C9—H90.9300
N1—C111.313 (3)C10—H10A0.9700
N1—C121.347 (3)C10—H10B0.9700
O2—C31.336 (3)C11—C151.396 (3)
O2—C171.432 (3)C12—C131.370 (4)
O3—C11.240 (3)C12—C161.482 (4)
O4—C11.304 (3)C13—C141.384 (4)
O4—H410.85 (4)C13—H130.9300
C1—C21.457 (3)C14—C151.350 (4)
C2—C31.326 (3)C14—H140.9300
C2—C41.497 (3)C15—H150.9300
C3—H30.9300C16—F11A1.291 (7)
C4—C91.387 (3)C16—F33A1.324 (8)
C4—C51.394 (3)C16—F3331.326 (9)
C5—C61.392 (3)C16—F1111.346 (10)
C5—C101.505 (3)C16—F2221.350 (10)
C6—C71.376 (4)C16—F22A1.350 (9)
C6—H60.9300C17—H17A0.9600
C7—C81.375 (4)C17—H17B0.9600
C7—H70.9300C17—H17C0.9600
C8—C91.375 (4)
C11—O1—C10118.71 (19)O1—C10—H10A110.0
C11—N1—C12115.5 (2)C5—C10—H10A110.0
C3—O2—C17117.1 (2)O1—C10—H10B110.0
C1—O4—H41115 (3)C5—C10—H10B110.0
O3—C1—O4121.7 (2)H10A—C10—H10B108.4
O3—C1—C2121.4 (2)N1—C11—O1120.1 (2)
O4—C1—C2116.9 (2)N1—C11—C15124.4 (2)
C3—C2—C1118.3 (2)O1—C11—C15115.5 (2)
C3—C2—C4123.2 (2)N1—C12—C13124.6 (3)
C1—C2—C4118.4 (2)N1—C12—C16114.5 (2)
C2—C3—O2122.0 (2)C13—C12—C16120.9 (3)
C2—C3—H3119.0C12—C13—C14117.7 (3)
O2—C3—H3119.0C12—C13—H13121.1
C9—C4—C5119.2 (2)C14—C13—H13121.1
C9—C4—C2119.2 (2)C15—C14—C13119.3 (3)
C5—C4—C2121.6 (2)C15—C14—H14120.3
C6—C5—C4119.3 (2)C13—C14—H14120.3
C6—C5—C10121.6 (2)C14—C15—C11118.4 (3)
C4—C5—C10119.1 (2)C14—C15—H15120.8
C7—C6—C5120.4 (2)C11—C15—H15120.8
C7—C6—H6119.8F11A—C16—C12118.5 (5)
C5—C6—H6119.8F33A—C16—C12113.2 (9)
C8—C7—C6120.5 (2)F333—C16—C12112.1 (9)
C8—C7—H7119.8F111—C16—C12106.9 (10)
C6—C7—H7119.8F222—C16—C12112 (8)
C7—C8—C9119.5 (3)F22A—C16—C12112 (7)
C7—C8—H8120.2O2—C17—H17A109.5
C9—C8—H8120.2O2—C17—H17B109.5
C8—C9—C4121.1 (3)H17A—C17—H17B109.5
C8—C9—H9119.4O2—C17—H17C109.5
C4—C9—H9119.4H17A—C17—H17C109.5
O1—C10—C5108.36 (19)H17B—C17—H17C109.5
O3—C1—C2—C3−179.2 (2)C12—N1—C11—O1−179.1 (2)
O4—C1—C2—C30.5 (4)C12—N1—C11—C15−0.2 (4)
O3—C1—C2—C44.4 (4)C10—O1—C11—N1−1.5 (3)
O4—C1—C2—C4−175.9 (2)C10—O1—C11—C15179.5 (2)
C1—C2—C3—O2−179.9 (2)C11—N1—C12—C13−0.6 (4)
C4—C2—C3—O2−3.7 (4)C11—N1—C12—C16177.8 (3)
C17—O2—C3—C2179.1 (2)N1—C12—C13—C140.9 (4)
C3—C2—C4—C9−80.6 (3)C16—C12—C13—C14−177.4 (3)
C1—C2—C4—C995.6 (3)C12—C13—C14—C15−0.3 (4)
C3—C2—C4—C599.8 (3)C13—C14—C15—C11−0.5 (4)
C1—C2—C4—C5−84.0 (3)N1—C11—C15—C140.8 (4)
C9—C4—C5—C6−0.7 (3)O1—C11—C15—C14179.7 (2)
C2—C4—C5—C6178.9 (2)N1—C12—C16—F11A47.7 (9)
C9—C4—C5—C10178.7 (2)C13—C12—C16—F11A−133.9 (8)
C2—C4—C5—C10−1.7 (3)N1—C12—C16—F33A175.8 (12)
C4—C5—C6—C70.3 (4)C13—C12—C16—F33A−5.8 (13)
C10—C5—C6—C7−179.1 (2)N1—C12—C16—F333−166.4 (15)
C5—C6—C7—C80.1 (4)C13—C12—C16—F33312.1 (16)
C6—C7—C8—C90.1 (4)N1—C12—C16—F11178.5 (15)
C7—C8—C9—C4−0.5 (4)C13—C12—C16—F111−103.0 (16)
C5—C4—C9—C80.8 (4)N1—C12—C16—F222−60 (8)
C2—C4—C9—C8−178.8 (2)C13—C12—C16—F222119 (9)
C11—O1—C10—C5−179.7 (2)N1—C12—C16—F22A−56 (8)
C6—C5—C10—O11.9 (3)C13—C12—C16—F22A123 (8)
C4—C5—C10—O1−177.5 (2)
D—H···AD—HH···AD···AD—H···A
O4—H41···O3i0.85 (4)1.78 (4)2.626 (3)174 (4)
C15—H15···O3ii0.932.583.392 (3)146
C17—H17A···F11Aiii0.962.413.135 (14)132
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O4—H41⋯O3i 0.85 (4)1.78 (4)2.626 (3)174 (4)
C15—H15⋯O3ii 0.932.583.392 (3)146
C17—H17A⋯F11A iii 0.962.413.135 (14)132

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Review of strobilurin fungicide chemicals.

Authors:  Hamdy Balba
Journal:  J Environ Sci Health B       Date:  2007-05       Impact factor: 1.990

3.  2-[(E)-Meth-oxy-imino]-2-{2-[(2-methyl-phen-oxy)meth-yl]phen-yl}ethanoic acid.

Authors:  Rajni Kant; Vivek K Gupta; Kamini Kapoor; Chetan S Shripanavar; Kaushik Banerjee
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-07-10

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total

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