| Literature DB >> 23284475 |
Xiao-Chuan Jia1, Jing Li, Zhi-Rui Yu, Hui Zhang, Lei Zhou.
Abstract
The asymmetric unit of the title compound, C(9)H(12)O(4), consists of two crystallographically independent mol-ecules with similar conformations: essentially planar [r.m.s deviations for C(6)O(4) = 0.0057 and 0.0137 Å] except for the central meth-oxy-methyl group [C-C-O-C torsion angles = 83.3 (2) and 83.9 (2)°]. In the crystal, O-H⋯O hydrogen bonds link the mol-ecules, generating supra-molecular chains along the b axis.The three-dimensional crystal structure is stabilized by C-H⋯O and C-H⋯π inter-actions.Entities:
Year: 2012 PMID: 23284475 PMCID: PMC3515255 DOI: 10.1107/S1600536812042997
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H12O4 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 5944 reflections |
| θ = 3.3–25.4° | |
| µ = 0.11 mm−1 | |
| β = 111.38 (3)° | Block, colourless |
| 0.20 × 0.15 × 0.10 mm | |
| Bruker SMART CCD area-detector diffractometer | 3257 independent reflections |
| Radiation source: fine-focus sealed tube | 2957 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.1°, θmin = 3.3° |
| Absorption correction: multi-scan ( | |
| 16747 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3257 reflections | (Δ/σ)max < 0.001 |
| 243 parameters | Δρmax = 0.12 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.33376 (8) | 0.41617 (11) | 0.19861 (12) | 0.0525 (3) | |
| H1 | 0.3521 | 0.3629 | 0.1642 | 0.079* | |
| O4 | 0.64034 (9) | 0.58079 (12) | 0.27042 (13) | 0.0602 (4) | |
| O3 | 0.61501 (8) | 0.74092 (10) | 0.42789 (11) | 0.0509 (3) | |
| C2 | 0.39182 (12) | 0.57694 (14) | 0.33613 (15) | 0.0445 (4) | |
| H2 | 0.3366 | 0.5772 | 0.3520 | 0.053* | |
| C3 | 0.46239 (12) | 0.65836 (14) | 0.39471 (15) | 0.0443 (4) | |
| C5 | 0.54480 (11) | 0.65824 (14) | 0.37034 (15) | 0.0443 (4) | |
| C7 | 0.55643 (11) | 0.57554 (15) | 0.28722 (15) | 0.0447 (4) | |
| O2 | 0.45748 (9) | 0.74281 (11) | 0.47812 (13) | 0.0579 (4) | |
| C9 | 0.48632 (11) | 0.49346 (15) | 0.22769 (15) | 0.0452 (4) | |
| H9 | 0.4938 | 0.4384 | 0.1715 | 0.054* | |
| C1 | 0.40488 (11) | 0.49505 (14) | 0.25354 (15) | 0.0426 (4) | |
| C8 | 0.64850 (16) | 0.5093 (2) | 0.1731 (2) | 0.0805 (7) | |
| H8A | 0.6423 | 0.4261 | 0.1903 | 0.121* | |
| H8B | 0.7085 | 0.5225 | 0.1673 | 0.121* | |
| H8C | 0.6002 | 0.5309 | 0.0958 | 0.121* | |
| C6 | 0.67555 (14) | 0.7061 (2) | 0.55005 (19) | 0.0676 (6) | |
| H6A | 0.6420 | 0.7098 | 0.6057 | 0.101* | |
| H6B | 0.7281 | 0.7596 | 0.5786 | 0.101* | |
| H6C | 0.6972 | 0.6256 | 0.5478 | 0.101* | |
| C4 | 0.38077 (15) | 0.73582 (19) | 0.5198 (2) | 0.0644 (5) | |
| H4A | 0.3235 | 0.7519 | 0.4514 | 0.097* | |
| H4B | 0.3890 | 0.7940 | 0.5843 | 0.097* | |
| H4C | 0.3782 | 0.6568 | 0.5517 | 0.097* | |
| O7 | 0.11271 (9) | 0.75191 (10) | 0.18255 (12) | 0.0519 (3) | |
| O5 | −0.16694 (8) | 1.08198 (11) | 0.13218 (12) | 0.0557 (3) | |
| H5 | −0.1501 | 1.1323 | 0.1878 | 0.084* | |
| O6 | 0.13740 (8) | 0.91453 (12) | 0.36143 (12) | 0.0587 (4) | |
| C16 | −0.03779 (12) | 0.83857 (15) | 0.06267 (15) | 0.0462 (4) | |
| C12 | 0.05455 (11) | 0.92090 (15) | 0.26236 (15) | 0.0440 (4) | |
| C18 | −0.10754 (12) | 0.92213 (15) | 0.05119 (16) | 0.0479 (4) | |
| H18 | −0.1617 | 0.9235 | −0.0197 | 0.058* | |
| C14 | 0.04348 (11) | 0.83728 (14) | 0.16863 (15) | 0.0439 (4) | |
| C11 | −0.01507 (11) | 1.00391 (15) | 0.25244 (15) | 0.0456 (4) | |
| H11 | −0.0079 | 1.0590 | 0.3158 | 0.055* | |
| O8 | −0.04248 (9) | 0.75347 (11) | −0.02475 (12) | 0.0606 (4) | |
| C10 | −0.09552 (11) | 1.00336 (15) | 0.14650 (16) | 0.0450 (4) | |
| C17 | −0.11899 (15) | 0.75973 (19) | −0.14040 (19) | 0.0659 (6) | |
| H17A | −0.1765 | 0.7496 | −0.1266 | 0.099* | |
| H17B | −0.1131 | 0.6974 | −0.1945 | 0.099* | |
| H17C | −0.1190 | 0.8365 | −0.1782 | 0.099* | |
| C15 | 0.17645 (16) | 0.7822 (2) | 0.1232 (2) | 0.0735 (6) | |
| H15A | 0.1450 | 0.7779 | 0.0346 | 0.110* | |
| H15B | 0.2279 | 0.7268 | 0.1487 | 0.110* | |
| H15C | 0.1994 | 0.8622 | 0.1463 | 0.110* | |
| C13 | 0.14821 (16) | 0.9927 (2) | 0.46273 (19) | 0.0749 (6) | |
| H13A | 0.1435 | 1.0744 | 0.4348 | 0.112* | |
| H13B | 0.2084 | 0.9798 | 0.5267 | 0.112* | |
| H13C | 0.1001 | 0.9766 | 0.4953 | 0.112* |
| O1 | 0.0433 (6) | 0.0543 (8) | 0.0560 (7) | −0.0037 (5) | 0.0135 (6) | −0.0136 (6) |
| O4 | 0.0501 (7) | 0.0696 (9) | 0.0688 (9) | −0.0055 (6) | 0.0311 (7) | −0.0059 (7) |
| O3 | 0.0527 (7) | 0.0453 (7) | 0.0509 (7) | −0.0101 (5) | 0.0143 (6) | 0.0044 (5) |
| C2 | 0.0429 (9) | 0.0426 (9) | 0.0496 (10) | 0.0027 (7) | 0.0186 (8) | 0.0017 (7) |
| C3 | 0.0492 (9) | 0.0375 (9) | 0.0460 (9) | 0.0017 (7) | 0.0172 (7) | 0.0010 (7) |
| C5 | 0.0463 (9) | 0.0387 (9) | 0.0454 (9) | −0.0035 (7) | 0.0139 (7) | 0.0049 (7) |
| C7 | 0.0438 (9) | 0.0461 (10) | 0.0458 (9) | 0.0033 (7) | 0.0182 (7) | 0.0074 (7) |
| O2 | 0.0614 (8) | 0.0503 (7) | 0.0698 (9) | −0.0090 (6) | 0.0330 (7) | −0.0185 (6) |
| C9 | 0.0490 (9) | 0.0439 (9) | 0.0427 (9) | 0.0047 (8) | 0.0167 (7) | −0.0002 (7) |
| C1 | 0.0406 (8) | 0.0418 (9) | 0.0408 (8) | 0.0029 (7) | 0.0092 (7) | 0.0035 (7) |
| C8 | 0.0706 (14) | 0.0924 (17) | 0.0975 (17) | −0.0050 (12) | 0.0533 (13) | −0.0198 (14) |
| C6 | 0.0596 (12) | 0.0693 (13) | 0.0594 (12) | −0.0081 (10) | 0.0047 (10) | 0.0066 (10) |
| C4 | 0.0720 (13) | 0.0632 (12) | 0.0698 (13) | −0.0076 (10) | 0.0399 (11) | −0.0177 (10) |
| O7 | 0.0555 (7) | 0.0461 (7) | 0.0579 (8) | 0.0084 (5) | 0.0253 (6) | 0.0097 (5) |
| O5 | 0.0506 (7) | 0.0549 (8) | 0.0590 (8) | 0.0072 (6) | 0.0167 (6) | −0.0080 (6) |
| O6 | 0.0483 (7) | 0.0689 (9) | 0.0505 (7) | 0.0006 (6) | 0.0079 (6) | −0.0046 (6) |
| C16 | 0.0547 (10) | 0.0395 (9) | 0.0449 (9) | −0.0035 (8) | 0.0188 (8) | −0.0016 (7) |
| C12 | 0.0416 (9) | 0.0468 (10) | 0.0434 (9) | −0.0064 (7) | 0.0151 (7) | 0.0038 (7) |
| C18 | 0.0481 (9) | 0.0477 (10) | 0.0437 (9) | −0.0014 (8) | 0.0117 (8) | −0.0004 (7) |
| C14 | 0.0459 (9) | 0.0402 (9) | 0.0478 (9) | 0.0005 (7) | 0.0197 (8) | 0.0048 (7) |
| C11 | 0.0493 (10) | 0.0442 (9) | 0.0448 (9) | −0.0058 (8) | 0.0189 (8) | −0.0047 (7) |
| O8 | 0.0676 (8) | 0.0514 (8) | 0.0547 (8) | 0.0062 (6) | 0.0126 (6) | −0.0130 (6) |
| C10 | 0.0444 (9) | 0.0419 (9) | 0.0516 (10) | −0.0010 (7) | 0.0210 (8) | 0.0019 (7) |
| C17 | 0.0733 (13) | 0.0658 (13) | 0.0511 (11) | 0.0015 (10) | 0.0139 (10) | −0.0141 (9) |
| C15 | 0.0728 (14) | 0.0749 (14) | 0.0894 (16) | 0.0121 (11) | 0.0492 (13) | 0.0126 (12) |
| C13 | 0.0688 (13) | 0.0847 (16) | 0.0551 (12) | −0.0053 (12) | 0.0034 (10) | −0.0148 (11) |
| O1—C1 | 1.364 (2) | O7—C14 | 1.391 (2) |
| O1—H1 | 0.8200 | O7—C15 | 1.425 (2) |
| O4—C7 | 1.372 (2) | O5—C10 | 1.366 (2) |
| O4—C8 | 1.420 (2) | O5—H5 | 0.8200 |
| O3—C5 | 1.389 (2) | O6—C12 | 1.368 (2) |
| O3—C6 | 1.431 (2) | O6—C13 | 1.418 (2) |
| C2—C3 | 1.386 (2) | C16—O8 | 1.367 (2) |
| C2—C1 | 1.386 (2) | C16—C18 | 1.388 (2) |
| C2—H2 | 0.9300 | C16—C14 | 1.393 (2) |
| C3—O2 | 1.368 (2) | C12—C11 | 1.386 (2) |
| C3—C5 | 1.393 (2) | C12—C14 | 1.391 (2) |
| C5—C7 | 1.388 (2) | C18—C10 | 1.384 (2) |
| C7—C9 | 1.389 (2) | C18—H18 | 0.9300 |
| O2—C4 | 1.428 (2) | C11—C10 | 1.386 (2) |
| C9—C1 | 1.388 (2) | C11—H11 | 0.9300 |
| C9—H9 | 0.9300 | O8—C17 | 1.423 (2) |
| C8—H8A | 0.9600 | C17—H17A | 0.9600 |
| C8—H8B | 0.9600 | C17—H17B | 0.9600 |
| C8—H8C | 0.9600 | C17—H17C | 0.9600 |
| C6—H6A | 0.9600 | C15—H15A | 0.9600 |
| C6—H6B | 0.9600 | C15—H15B | 0.9600 |
| C6—H6C | 0.9600 | C15—H15C | 0.9600 |
| C4—H4A | 0.9600 | C13—H13A | 0.9600 |
| C4—H4B | 0.9600 | C13—H13B | 0.9600 |
| C4—H4C | 0.9600 | C13—H13C | 0.9600 |
| C1—O1—H1 | 109.5 | C14—O7—C15 | 114.37 (14) |
| C7—O4—C8 | 116.51 (15) | C10—O5—H5 | 109.5 |
| C5—O3—C6 | 113.81 (13) | C12—O6—C13 | 116.83 (15) |
| C3—C2—C1 | 118.89 (16) | O8—C16—C18 | 124.27 (16) |
| C3—C2—H2 | 120.6 | O8—C16—C14 | 115.49 (15) |
| C1—C2—H2 | 120.6 | C18—C16—C14 | 120.24 (15) |
| O2—C3—C2 | 124.04 (15) | O6—C12—C11 | 123.91 (15) |
| O2—C3—C5 | 115.48 (15) | O6—C12—C14 | 115.38 (15) |
| C2—C3—C5 | 120.48 (15) | C11—C12—C14 | 120.71 (15) |
| C7—C5—O3 | 119.84 (15) | C10—C18—C16 | 119.19 (16) |
| C7—C5—C3 | 119.71 (15) | C10—C18—H18 | 120.4 |
| O3—C5—C3 | 120.44 (15) | C16—C18—H18 | 120.4 |
| O4—C7—C5 | 115.70 (15) | C12—C14—O7 | 119.76 (15) |
| O4—C7—C9 | 123.82 (15) | C12—C14—C16 | 119.52 (15) |
| C5—C7—C9 | 120.48 (15) | O7—C14—C16 | 120.71 (15) |
| C3—O2—C4 | 117.63 (14) | C10—C11—C12 | 118.84 (15) |
| C1—C9—C7 | 118.82 (15) | C10—C11—H11 | 120.6 |
| C1—C9—H9 | 120.6 | C12—C11—H11 | 120.6 |
| C7—C9—H9 | 120.6 | C16—O8—C17 | 117.52 (14) |
| O1—C1—C2 | 116.85 (15) | O5—C10—C18 | 117.03 (15) |
| O1—C1—C9 | 121.55 (15) | O5—C10—C11 | 121.48 (15) |
| C2—C1—C9 | 121.61 (15) | C18—C10—C11 | 121.49 (16) |
| O4—C8—H8A | 109.5 | O8—C17—H17A | 109.5 |
| O4—C8—H8B | 109.5 | O8—C17—H17B | 109.5 |
| H8A—C8—H8B | 109.5 | H17A—C17—H17B | 109.5 |
| O4—C8—H8C | 109.5 | O8—C17—H17C | 109.5 |
| H8A—C8—H8C | 109.5 | H17A—C17—H17C | 109.5 |
| H8B—C8—H8C | 109.5 | H17B—C17—H17C | 109.5 |
| O3—C6—H6A | 109.5 | O7—C15—H15A | 109.5 |
| O3—C6—H6B | 109.5 | O7—C15—H15B | 109.5 |
| H6A—C6—H6B | 109.5 | H15A—C15—H15B | 109.5 |
| O3—C6—H6C | 109.5 | O7—C15—H15C | 109.5 |
| H6A—C6—H6C | 109.5 | H15A—C15—H15C | 109.5 |
| H6B—C6—H6C | 109.5 | H15B—C15—H15C | 109.5 |
| O2—C4—H4A | 109.5 | O6—C13—H13A | 109.5 |
| O2—C4—H4B | 109.5 | O6—C13—H13B | 109.5 |
| H4A—C4—H4B | 109.5 | H13A—C13—H13B | 109.5 |
| O2—C4—H4C | 109.5 | O6—C13—H13C | 109.5 |
| H4A—C4—H4C | 109.5 | H13A—C13—H13C | 109.5 |
| H4B—C4—H4C | 109.5 | H13B—C13—H13C | 109.5 |
| C1—C2—C3—O2 | −179.75 (15) | C13—O6—C12—C11 | 4.7 (2) |
| C1—C2—C3—C5 | 0.4 (2) | C13—O6—C12—C14 | −175.54 (17) |
| C6—O3—C5—C7 | −97.21 (19) | O8—C16—C18—C10 | 179.30 (16) |
| C6—O3—C5—C3 | 83.3 (2) | C14—C16—C18—C10 | −0.4 (3) |
| O2—C3—C5—C7 | 179.80 (15) | O6—C12—C14—O7 | 2.6 (2) |
| C2—C3—C5—C7 | −0.3 (2) | C11—C12—C14—O7 | −177.60 (14) |
| O2—C3—C5—O3 | −0.7 (2) | O6—C12—C14—C16 | −178.57 (15) |
| C2—C3—C5—O3 | 179.16 (14) | C11—C12—C14—C16 | 1.2 (2) |
| C8—O4—C7—C5 | −171.18 (17) | C15—O7—C14—C12 | −97.3 (2) |
| C8—O4—C7—C9 | 9.5 (3) | C15—O7—C14—C16 | 83.9 (2) |
| O3—C5—C7—O4 | 1.5 (2) | O8—C16—C14—C12 | 179.76 (15) |
| C3—C5—C7—O4 | −179.02 (15) | C18—C16—C14—C12 | −0.5 (2) |
| O3—C5—C7—C9 | −179.10 (14) | O8—C16—C14—O7 | −1.5 (2) |
| C3—C5—C7—C9 | 0.4 (2) | C18—C16—C14—O7 | 178.29 (15) |
| C2—C3—O2—C4 | 8.9 (2) | O6—C12—C11—C10 | 178.80 (15) |
| C5—C3—O2—C4 | −171.24 (16) | C14—C12—C11—C10 | −0.9 (2) |
| O4—C7—C9—C1 | 178.85 (15) | C18—C16—O8—C17 | 7.3 (3) |
| C5—C7—C9—C1 | −0.5 (2) | C14—C16—O8—C17 | −173.01 (16) |
| C3—C2—C1—O1 | 179.64 (14) | C16—C18—C10—O5 | −178.55 (15) |
| C3—C2—C1—C9 | −0.5 (2) | C16—C18—C10—C11 | 0.7 (3) |
| C7—C9—C1—O1 | −179.58 (14) | C12—C11—C10—O5 | 179.19 (15) |
| C7—C9—C1—C2 | 0.6 (2) | C12—C11—C10—C18 | 0.0 (2) |
| H··· | ||||
| O5—H5···O7i | 0.82 | 1.93 | 2.7484 (18) | 179 |
| O1—H1···O3ii | 0.82 | 1.90 | 2.7204 (17) | 175 |
| C6—H6 | 0.96 | 2.57 | 3.256 (3) | 129 |
| C15—H15 | 0.96 | 2.59 | 3.270 (3) | 128 |
| C4—H4 | 0.96 | 2.86 | 3.777 (2) | 160 |
| C17—H17 | 0.96 | 2.85 | 3.736 (2) | 154 |
| C13—H13 | 0.96 | 2.49 | 3.303 (3) | 142 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of the C1–C3,C5,C7,C9 and C10–C12,C14,C16,C18 benzene rings, respectively.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O5—H5⋯O7i | 0.82 | 1.93 | 2.7484 (18) | 179 |
| O1—H1⋯O3ii | 0.82 | 1.90 | 2.7204 (17) | 175 |
| C6—H6 | 0.96 | 2.57 | 3.256 (3) | 129 |
| C15—H15 | 0.96 | 2.59 | 3.270 (3) | 128 |
| C4—H4 | 0.96 | 2.86 | 3.777 (2) | 160 |
| C17—H17 | 0.96 | 2.85 | 3.736 (2) | 154 |
| C13—H13 | 0.96 | 2.49 | 3.303 (3) | 142 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) .