Literature DB >> 23284472

1-[5-Acetyl-2,6-dimethyl-4-(5-phenyl-1H-pyrazol-3-yl)-1,4-dihydro-pyridin-3-yl]ethanone monohydrate.

Arun M Islor1, Shridhar Malladi, S Sundershan, Thomas Gerber, Eric Hosten, Richard Betz.   

Abstract

In the title compound, C(20)H(21)N(3)O(2)·H(2)O, the aza-substitued six-membered ring adopts a (L4)B conformation. In the crystal, classical N-H⋯O, N-H⋯N and O-H⋯O hydrogen bonds connect the entities into a three-dimensional network. Intra-molecular C-H⋯O contacts are also observed.

Entities:  

Year:  2012        PMID: 23284472      PMCID: PMC3515252          DOI: 10.1107/S1600536812042614

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmaceutical properties of 1,4-dihydro­pyridine-derived drugs, see: Janis & Triggle (1983 ▶); Boecker & Guengerich (1986 ▶); Gordeev et al. (1996 ▶); Buhler & Kiowski (1987 ▶); Vo et al. (1995 ▶). For the conformational analysis of puckering factors of five- and six-membered rings, see: Cremer & Pople (1975 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C20H21N3O2·H2O M = 353.41 Monoclinic, a = 10.3516 (2) Å b = 12.4352 (3) Å c = 15.4101 (3) Å β = 112.798 (1)° V = 1828.68 (7) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 200 K 0.41 × 0.34 × 0.18 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.965, T max = 0.984 17882 measured reflections 4559 independent reflections 3849 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.114 S = 1.04 4559 reflections 255 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.30 e Å−3 Δρmin = −0.21 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812042614/hg5260sup1.cif Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042614/hg5260Isup2.cdx Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042614/hg5260Isup3.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042614/hg5260Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H21N3O2·H2OF(000) = 752
Mr = 353.41Dx = 1.284 Mg m3
Monoclinic, P21/cMelting point = 428–430 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 10.3516 (2) ÅCell parameters from 8726 reflections
b = 12.4352 (3) Åθ = 2.7–28.3°
c = 15.4101 (3) ŵ = 0.09 mm1
β = 112.798 (1)°T = 200 K
V = 1828.68 (7) Å3Block, yellow
Z = 40.41 × 0.34 × 0.18 mm
Bruker APEXII CCD diffractometer4559 independent reflections
Radiation source: fine-focus sealed tube3849 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.015
φ and ω scansθmax = 28.4°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −13→13
Tmin = 0.965, Tmax = 0.984k = −14→16
17882 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.04w = 1/[σ2(Fo2) + (0.0577P)2 + 0.5735P] where P = (Fo2 + 2Fc2)/3
4559 reflections(Δ/σ)max < 0.001
255 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.21 e Å3
xyzUiso*/Ueq
O1−0.05984 (10)0.17652 (9)0.56849 (7)0.0425 (2)
O20.51356 (9)0.21848 (9)0.56375 (7)0.0427 (2)
O30.79358 (10)0.22697 (7)0.16165 (6)0.0315 (2)
N10.08635 (11)0.45919 (8)0.30709 (7)0.0313 (2)
N20.16757 (11)0.51591 (8)0.38313 (7)0.0282 (2)
N30.08322 (10)0.08888 (8)0.35769 (6)0.0246 (2)
C10.31972 (13)0.50359 (9)0.54994 (8)0.0277 (2)
C20.26550 (17)0.58840 (11)0.58442 (9)0.0411 (3)
H20.17230.61210.55010.049*
C30.3462 (2)0.63860 (12)0.66841 (10)0.0515 (4)
H3A0.30790.69600.69150.062*
C40.4812 (2)0.60560 (14)0.71812 (10)0.0546 (4)
H40.53680.64030.77540.066*
C50.53562 (17)0.52211 (18)0.68471 (11)0.0608 (5)
H50.62920.49940.71920.073*
C60.45549 (14)0.47036 (14)0.60104 (10)0.0439 (3)
H60.49410.41220.57910.053*
C70.23241 (11)0.45289 (9)0.45943 (8)0.0240 (2)
C80.19044 (11)0.34797 (9)0.43179 (7)0.0216 (2)
C90.09862 (13)0.35805 (9)0.33685 (8)0.0285 (2)
H90.05090.29920.29850.034*
C100.22607 (10)0.24440 (8)0.48768 (7)0.0204 (2)
H100.28970.26170.55390.025*
C110.30207 (11)0.16707 (9)0.44653 (7)0.0219 (2)
C120.22486 (11)0.09714 (9)0.37820 (7)0.0233 (2)
C130.02198 (11)0.12349 (9)0.41735 (7)0.0232 (2)
C140.09434 (11)0.19160 (9)0.48922 (7)0.0221 (2)
C150.04407 (12)0.21902 (9)0.56260 (8)0.0262 (2)
C160.12422 (15)0.30098 (12)0.63511 (9)0.0382 (3)
H16A0.13710.36610.60350.057*
H16B0.21600.27150.67490.057*
H16C0.07180.31880.67420.057*
C170.45534 (12)0.17368 (9)0.48711 (8)0.0275 (2)
C180.54636 (14)0.12884 (13)0.43963 (10)0.0403 (3)
H18A0.51010.15220.37380.061*
H18B0.54570.05010.44230.061*
H18C0.64250.15500.47190.061*
C19−0.12248 (12)0.07969 (11)0.39365 (9)0.0327 (3)
H19A−0.15670.04760.33070.049*
H19B−0.18530.13810.39490.049*
H19C−0.11990.02470.43990.049*
C200.27302 (13)0.02042 (10)0.32129 (9)0.0320 (3)
H20A0.1915−0.01520.27420.048*
H20B0.3352−0.03370.36310.048*
H20C0.32370.06030.28950.048*
H30.0349 (17)0.0442 (14)0.3127 (12)0.041 (4)*
H2A0.1834 (19)0.5891 (15)0.3761 (12)0.052 (5)*
H3B0.708 (2)0.2444 (15)0.1288 (13)0.052 (5)*
H3C0.8389 (19)0.2649 (16)0.1352 (12)0.051 (5)*
U11U22U33U12U13U23
O10.0411 (5)0.0483 (6)0.0488 (6)−0.0131 (4)0.0291 (4)−0.0137 (4)
O20.0226 (4)0.0535 (6)0.0444 (5)0.0012 (4)0.0046 (4)−0.0123 (5)
O30.0288 (4)0.0270 (5)0.0379 (5)0.0030 (3)0.0118 (4)0.0019 (3)
N10.0339 (5)0.0258 (5)0.0265 (5)0.0009 (4)0.0034 (4)0.0030 (4)
N20.0321 (5)0.0202 (5)0.0278 (5)−0.0003 (4)0.0068 (4)0.0030 (4)
N30.0256 (5)0.0228 (5)0.0229 (4)−0.0016 (4)0.0066 (4)−0.0041 (3)
C10.0336 (6)0.0220 (5)0.0258 (5)−0.0059 (4)0.0098 (4)0.0007 (4)
C20.0586 (9)0.0276 (7)0.0334 (6)0.0049 (6)0.0137 (6)−0.0011 (5)
C30.0906 (13)0.0282 (7)0.0366 (7)−0.0079 (7)0.0256 (8)−0.0070 (6)
C40.0712 (11)0.0577 (10)0.0309 (6)−0.0320 (9)0.0153 (7)−0.0133 (7)
C50.0375 (8)0.0912 (14)0.0410 (8)−0.0132 (8)0.0014 (6)−0.0141 (9)
C60.0315 (6)0.0564 (9)0.0376 (7)−0.0012 (6)0.0065 (5)−0.0101 (6)
C70.0239 (5)0.0216 (5)0.0254 (5)0.0004 (4)0.0084 (4)0.0013 (4)
C80.0214 (5)0.0197 (5)0.0227 (5)0.0011 (4)0.0072 (4)0.0007 (4)
C90.0317 (6)0.0227 (6)0.0250 (5)0.0000 (4)0.0043 (4)0.0006 (4)
C100.0202 (5)0.0187 (5)0.0204 (4)0.0003 (4)0.0055 (4)−0.0001 (4)
C110.0225 (5)0.0197 (5)0.0234 (5)0.0029 (4)0.0087 (4)0.0029 (4)
C120.0267 (5)0.0196 (5)0.0227 (5)0.0046 (4)0.0087 (4)0.0034 (4)
C130.0230 (5)0.0207 (5)0.0247 (5)0.0006 (4)0.0080 (4)0.0022 (4)
C140.0223 (5)0.0205 (5)0.0228 (5)0.0008 (4)0.0080 (4)0.0012 (4)
C150.0273 (5)0.0251 (6)0.0271 (5)0.0015 (4)0.0116 (4)−0.0003 (4)
C160.0427 (7)0.0440 (8)0.0337 (6)−0.0104 (6)0.0212 (5)−0.0139 (5)
C170.0238 (5)0.0244 (6)0.0333 (6)0.0033 (4)0.0101 (4)0.0046 (4)
C180.0289 (6)0.0501 (8)0.0464 (7)0.0014 (6)0.0195 (6)−0.0014 (6)
C190.0261 (6)0.0351 (7)0.0352 (6)−0.0075 (5)0.0100 (5)−0.0066 (5)
C200.0347 (6)0.0287 (6)0.0321 (6)0.0065 (5)0.0123 (5)−0.0054 (5)
O1—C151.2329 (15)C8—C101.5133 (14)
O2—C171.2316 (15)C9—H90.9500
O3—H3B0.86 (2)C10—C141.5219 (14)
O3—H3C0.87 (2)C10—C111.5272 (14)
N1—C91.3279 (16)C10—H101.0000
N1—N21.3468 (14)C11—C121.3608 (15)
N2—C71.3549 (14)C11—C171.4649 (15)
N2—H2A0.938 (19)C12—C201.5055 (15)
N3—C131.3726 (14)C13—C141.3646 (15)
N3—C121.3788 (15)C13—C191.4977 (15)
N3—H30.878 (17)C14—C151.4565 (15)
C1—C61.3814 (18)C15—C161.5025 (16)
C1—C21.3931 (18)C16—H16A0.9800
C1—C71.4775 (15)C16—H16B0.9800
C2—C31.387 (2)C16—H16C0.9800
C2—H20.9500C17—C181.5060 (17)
C3—C41.371 (3)C18—H18A0.9800
C3—H3A0.9500C18—H18B0.9800
C4—C51.373 (3)C18—H18C0.9800
C4—H40.9500C19—H19A0.9800
C5—C61.391 (2)C19—H19B0.9800
C5—H50.9500C19—H19C0.9800
C6—H60.9500C20—H20A0.9800
C7—C81.3888 (15)C20—H20B0.9800
C8—C91.4079 (14)C20—H20C0.9800
H3B—O3—H3C102.1 (16)C12—C11—C10118.75 (9)
C9—N1—N2104.58 (9)C17—C11—C10115.75 (9)
N1—N2—C7112.61 (10)C11—C12—N3118.60 (10)
N1—N2—H2A119.0 (11)C11—C12—C20128.90 (10)
C7—N2—H2A127.7 (11)N3—C12—C20112.46 (10)
C13—N3—C12123.31 (9)C14—C13—N3119.18 (10)
C13—N3—H3117.2 (11)C14—C13—C19127.29 (10)
C12—N3—H3117.3 (11)N3—C13—C19113.53 (10)
C6—C1—C2118.71 (12)C13—C14—C15121.77 (10)
C6—C1—C7121.70 (11)C13—C14—C10117.93 (9)
C2—C1—C7119.58 (11)C15—C14—C10120.19 (9)
C3—C2—C1120.69 (15)O1—C15—C14122.76 (11)
C3—C2—H2119.7O1—C15—C16118.82 (10)
C1—C2—H2119.7C14—C15—C16118.41 (10)
C4—C3—C2120.12 (15)C15—C16—H16A109.5
C4—C3—H3A119.9C15—C16—H16B109.5
C2—C3—H3A119.9H16A—C16—H16B109.5
C3—C4—C5119.63 (13)C15—C16—H16C109.5
C3—C4—H4120.2H16A—C16—H16C109.5
C5—C4—H4120.2H16B—C16—H16C109.5
C4—C5—C6120.89 (16)O2—C17—C11118.77 (11)
C4—C5—H5119.6O2—C17—C18117.87 (11)
C6—C5—H5119.6C11—C17—C18123.36 (11)
C1—C6—C5119.96 (15)C17—C18—H18A109.5
C1—C6—H6120.0C17—C18—H18B109.5
C5—C6—H6120.0H18A—C18—H18B109.5
N2—C7—C8106.64 (9)C17—C18—H18C109.5
N2—C7—C1119.24 (10)H18A—C18—H18C109.5
C8—C7—C1134.00 (10)H18B—C18—H18C109.5
C7—C8—C9103.89 (9)C13—C19—H19A109.5
C7—C8—C10130.29 (9)C13—C19—H19B109.5
C9—C8—C10125.78 (10)H19A—C19—H19B109.5
N1—C9—C8112.27 (10)C13—C19—H19C109.5
N1—C9—H9123.9H19A—C19—H19C109.5
C8—C9—H9123.9H19B—C19—H19C109.5
C8—C10—C14110.72 (8)C12—C20—H20A109.5
C8—C10—C11110.53 (8)C12—C20—H20B109.5
C14—C10—C11110.10 (8)H20A—C20—H20B109.5
C8—C10—H10108.5C12—C20—H20C109.5
C14—C10—H10108.5H20A—C20—H20C109.5
C11—C10—H10108.5H20B—C20—H20C109.5
C12—C11—C17125.48 (10)
C9—N1—N2—C71.05 (14)C14—C10—C11—C1233.04 (13)
C6—C1—C2—C30.0 (2)C8—C10—C11—C1791.88 (11)
C7—C1—C2—C3−178.86 (13)C14—C10—C11—C17−145.49 (9)
C1—C2—C3—C40.5 (2)C17—C11—C12—N3169.86 (10)
C2—C3—C4—C5−0.5 (2)C10—C11—C12—N3−8.51 (15)
C3—C4—C5—C6−0.1 (3)C17—C11—C12—C20−7.34 (18)
C2—C1—C6—C5−0.6 (2)C10—C11—C12—C20174.29 (10)
C7—C1—C6—C5178.25 (14)C13—N3—C12—C11−18.40 (16)
C4—C5—C6—C10.7 (3)C13—N3—C12—C20159.25 (10)
N1—N2—C7—C8−0.31 (13)C12—N3—C13—C1416.24 (16)
N1—N2—C7—C1−176.91 (10)C12—N3—C13—C19−163.95 (10)
C6—C1—C7—N2−128.63 (13)N3—C13—C14—C15−171.08 (10)
C2—C1—C7—N250.24 (16)C19—C13—C14—C159.13 (18)
C6—C1—C7—C855.9 (2)N3—C13—C14—C1012.63 (15)
C2—C1—C7—C8−125.23 (15)C19—C13—C14—C10−167.15 (11)
N2—C7—C8—C9−0.53 (12)C8—C10—C14—C1387.54 (12)
C1—C7—C8—C9175.35 (13)C11—C10—C14—C13−34.99 (13)
N2—C7—C8—C10−178.25 (10)C8—C10—C14—C15−88.80 (11)
C1—C7—C8—C10−2.4 (2)C11—C10—C14—C15148.67 (10)
N2—N1—C9—C8−1.40 (14)C13—C14—C15—O15.77 (18)
C7—C8—C9—N11.23 (14)C10—C14—C15—O1−178.02 (11)
C10—C8—C9—N1179.10 (10)C13—C14—C15—C16−175.47 (11)
C7—C8—C10—C14119.14 (12)C10—C14—C15—C160.73 (16)
C9—C8—C10—C14−58.14 (14)C12—C11—C17—O2−160.83 (12)
C7—C8—C10—C11−118.59 (12)C10—C11—C17—O217.58 (16)
C9—C8—C10—C1164.13 (14)C12—C11—C17—C1819.51 (18)
C8—C10—C11—C12−89.60 (11)C10—C11—C17—C18−162.08 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O3i0.938 (19)1.855 (19)2.7822 (14)169.1 (16)
N3—H3···N1ii0.878 (17)2.075 (17)2.9454 (13)171.1 (15)
O3—H3B···O2iii0.86 (2)1.92 (2)2.7838 (13)175.8 (17)
O3—H3C···O1iv0.87 (2)1.88 (2)2.7372 (14)169.8 (18)
C6—H6···O20.952.443.282 (2)148
C10—H10···O21.002.332.7624 (13)105
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2A⋯O3i 0.938 (19)1.855 (19)2.7822 (14)169.1 (16)
N3—H3⋯N1ii 0.878 (17)2.075 (17)2.9454 (13)171.1 (15)
O3—H3B⋯O2iii 0.86 (2)1.92 (2)2.7838 (13)175.8 (17)
O3—H3C⋯O1iv 0.87 (2)1.88 (2)2.7372 (14)169.8 (18)
C6—H6⋯O20.952.443.282 (2)148
C10—H10⋯O21.002.332.7624 (13)105

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  7 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

Review 3.  New developments in Ca2+ channel antagonists.

Authors:  R A Janis; D J Triggle
Journal:  J Med Chem       Date:  1983-06       Impact factor: 7.446

Review 4.  Calcium antagonists in hypertension.

Authors:  F R Bühler; W Kiowski
Journal:  J Hypertens Suppl       Date:  1987-08

5.  Syntheses, calcium channel agonist-antagonist modulation activities, and voltage-clamp studies of isopropyl 1,4-dihydro-2,6-dimethyl-3-nitro-4-pyridinylpyridine-5-carboxylate racemates and enantiomers.

Authors:  D Vo; W C Matowe; M Ramesh; N Iqbal; M W Wolowyk; S E Howlett; E E Knaus
Journal:  J Med Chem       Date:  1995-07-21       Impact factor: 7.446

6.  Oxidation of 4-aryl- and 4-alkyl-substituted 2,6-dimethyl-3,5-bis(alkoxycarbonyl)-1,4-dihydropyridines by human liver microsomes and immunochemical evidence for the involvement of a form of cytochrome P-450.

Authors:  R H Böcker; F P Guengerich
Journal:  J Med Chem       Date:  1986-09       Impact factor: 7.446

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total

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