Literature DB >> 23284471

Quinolin-3-amine.

Arun M Islor1, B Chandrakantha, Prakash Shetty, Thomas Gerber, Eric Hosten, Richard Betz.   

Abstract

In the crystal structur of the achiral title compound, C(9)H(8)N(2), N-H⋯N hydrogen bonds connect the mol-ecules into zigzag chains in [100]. Weak inter-molecular N-H⋯π inter-actions further consolidate the crystal packing.

Entities:  

Year:  2012        PMID: 23284471      PMCID: PMC3515251          DOI: 10.1107/S1600536812042626

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For novel applications of quinolin-3-amine and its derivatives, see: Rohmer et al. (2010 ▶); Kaneshiro et al. (2011 ▶). For the crystal structure of a rhodium coordination compound featuring the title compound as a ligand, see: Garralda et al. (1999 ▶). For graph-set analysis of hydrogen bonds, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶).

Experimental

Crystal data

C9H8N2 M = 144.17 Orthorhombic, a = 7.6223 (3) Å b = 7.6289 (3) Å c = 12.6967 (4) Å V = 738.31 (5) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 200 K 0.55 × 0.52 × 0.15 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.950, T max = 0.988 6898 measured reflections 1077 independent reflections 1015 reflections with I > 2σ(I) R int = 0.013

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.091 S = 1.03 1077 reflections 108 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.23 e Å−3 Δρmin = −0.20 e Å−3 Data collection: APEX2 (Bruker, 2010 ▶); cell refinement: SAINT (Bruker, 2010 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812042626/cv5347sup1.cif Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042626/cv5347Isup2.cdx Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042626/cv5347Isup3.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042626/cv5347Isup4.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H8N2Dx = 1.297 Mg m3
Mr = 144.17Melting point = 366–368 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5242 reflections
a = 7.6223 (3) Åθ = 2.7–28.3°
b = 7.6289 (3) ŵ = 0.08 mm1
c = 12.6967 (4) ÅT = 200 K
V = 738.31 (5) Å3Block, colourless
Z = 40.55 × 0.52 × 0.15 mm
F(000) = 304
Bruker APEXII CCD diffractometer1077 independent reflections
Radiation source: fine-focus sealed tube1015 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.013
φ and ω scansθmax = 28.3°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −6→10
Tmin = 0.950, Tmax = 0.988k = −9→10
6898 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.032Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.091H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0591P)2 + 0.1011P] where P = (Fo2 + 2Fc2)/3
1077 reflections(Δ/σ)max < 0.001
108 parametersΔρmax = 0.23 e Å3
0 restraintsΔρmin = −0.20 e Å3
Refinement. Due to the absence of a strong anomalous scatterer, the Flack parameter is meaningless. Thus, Friedel opposites (737 pairs) have been merged and the item was removed from the CIF.
xyzUiso*/Ueq
N10.25487 (15)0.26319 (16)0.38612 (8)0.0280 (3)
N2−0.18546 (17)0.08305 (19)0.39280 (11)0.0359 (3)
H2A−0.258 (3)0.023 (3)0.3568 (15)0.056 (6)*
H2B−0.198 (2)0.098 (3)0.4628 (17)0.043 (5)*
C10.30327 (17)0.23241 (17)0.28353 (9)0.0249 (3)
C20.09884 (17)0.21121 (18)0.41581 (9)0.0277 (3)
H20.06630.23230.48690.033*
C3−0.02593 (17)0.12565 (16)0.35016 (9)0.0253 (3)
C40.02155 (18)0.09412 (17)0.24707 (10)0.0265 (3)
H4−0.05760.03760.20030.032*
C50.18933 (16)0.14693 (17)0.21189 (9)0.0244 (3)
C60.24840 (19)0.11883 (19)0.10713 (10)0.0299 (3)
H60.17430.06090.05800.036*
C70.4113 (2)0.17449 (19)0.07635 (10)0.0344 (3)
H70.44880.15530.00590.041*
C80.52397 (19)0.2599 (2)0.14793 (11)0.0353 (3)
H80.63660.29820.12560.042*
C90.47097 (17)0.28794 (19)0.25005 (11)0.0313 (3)
H90.54740.34480.29820.038*
U11U22U33U12U13U23
N10.0323 (5)0.0323 (6)0.0193 (5)−0.0026 (5)−0.0030 (4)−0.0003 (4)
N20.0318 (6)0.0443 (7)0.0316 (6)−0.0081 (5)0.0052 (5)−0.0086 (6)
C10.0277 (6)0.0263 (6)0.0207 (5)0.0017 (5)−0.0018 (5)0.0009 (5)
C20.0340 (6)0.0299 (6)0.0191 (5)−0.0004 (5)−0.0012 (5)−0.0007 (5)
C30.0279 (6)0.0238 (5)0.0243 (6)0.0009 (5)−0.0004 (5)−0.0006 (5)
C40.0306 (6)0.0264 (6)0.0226 (5)−0.0013 (5)−0.0021 (5)−0.0045 (5)
C50.0303 (6)0.0228 (6)0.0202 (5)0.0027 (5)−0.0006 (5)−0.0003 (5)
C60.0382 (7)0.0298 (6)0.0218 (6)0.0032 (5)0.0015 (5)−0.0037 (5)
C70.0430 (7)0.0348 (7)0.0254 (5)0.0059 (6)0.0084 (6)−0.0008 (5)
C80.0320 (6)0.0389 (7)0.0350 (7)0.0010 (6)0.0070 (6)0.0052 (6)
C90.0294 (7)0.0347 (7)0.0298 (6)−0.0008 (5)−0.0009 (5)0.0008 (6)
N1—C21.3091 (17)C4—C51.4133 (18)
N1—C11.3740 (16)C4—H40.9500
N2—C31.3701 (17)C5—C61.4205 (17)
N2—H2A0.85 (2)C6—C71.369 (2)
N2—H2B0.90 (2)C6—H60.9500
C1—C91.4122 (18)C7—C81.410 (2)
C1—C51.4167 (17)C7—H70.9500
C2—C31.4231 (17)C8—C91.375 (2)
C2—H20.9500C8—H80.9500
C3—C41.3792 (17)C9—H90.9500
C2—N1—C1117.72 (11)C4—C5—C1118.88 (11)
C3—N2—H2A119.4 (14)C4—C5—C6122.66 (12)
C3—N2—H2B116.8 (12)C1—C5—C6118.45 (12)
H2A—N2—H2B122.1 (18)C7—C6—C5120.52 (13)
N1—C1—C9118.50 (12)C7—C6—H6119.7
N1—C1—C5121.52 (12)C5—C6—H6119.7
C9—C1—C5119.98 (11)C6—C7—C8120.78 (12)
N1—C2—C3125.27 (11)C6—C7—H7119.6
N1—C2—H2117.4C8—C7—H7119.6
C3—C2—H2117.4C9—C8—C7120.04 (13)
N2—C3—C4124.50 (12)C9—C8—H8120.0
N2—C3—C2118.07 (11)C7—C8—H8120.0
C4—C3—C2117.42 (12)C8—C9—C1120.22 (13)
C3—C4—C5119.19 (12)C8—C9—H9119.9
C3—C4—H4120.4C1—C9—H9119.9
C5—C4—H4120.4
C2—N1—C1—C9179.86 (12)C9—C1—C5—C4−179.41 (11)
C2—N1—C1—C5−0.20 (19)N1—C1—C5—C6−179.74 (12)
C1—N1—C2—C3−0.3 (2)C9—C1—C5—C60.20 (18)
N1—C2—C3—N2−178.55 (13)C4—C5—C6—C7179.12 (12)
N1—C2—C3—C40.3 (2)C1—C5—C6—C7−0.5 (2)
N2—C3—C4—C5178.95 (12)C5—C6—C7—C80.3 (2)
C2—C3—C4—C50.15 (18)C6—C7—C8—C90.1 (2)
C3—C4—C5—C1−0.61 (18)C7—C8—C9—C1−0.4 (2)
C3—C4—C5—C6179.80 (12)N1—C1—C9—C8−179.82 (13)
N1—C1—C5—C40.66 (18)C5—C1—C9—C80.2 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2B···N1i0.90 (2)2.22 (2)3.0761 (17)158.2 (18)
N2—H2A···Cgii0.85 (2)2.60 (2)3.3101 (15)142.3 (19)
Table 1

Hydrogen-bond geometry (Å, °)

Cg is the centroid of the C1/C5–C9 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N2—H2B⋯N1i 0.90 (2)2.22 (2)3.0761 (17)158.2 (18)
N2—H2ACg ii 0.85 (2)2.60 (2)3.3101 (15)142.3 (19)

Symmetry codes: (i) ; (ii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

3.  3-Aminoquinoline acting as matrix and derivatizing agent for MALDI MS analysis of oligosaccharides.

Authors:  Marion Rohmer; Bjoern Meyer; Marko Mank; Bernd Stahl; Ute Bahr; Michael Karas
Journal:  Anal Chem       Date:  2010-05-01       Impact factor: 6.986

4.  Highly sensitive MALDI analyses of glycans by a new aminoquinoline-labeling method using 3-aminoquinoline/α-cyano-4-hydroxycinnamic acid liquid matrix.

Authors:  Kaoru Kaneshiro; Yuko Fukuyama; Shinichi Iwamoto; Sadanori Sekiya; Koichi Tanaka
Journal:  Anal Chem       Date:  2011-04-27       Impact factor: 6.986

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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