Literature DB >> 23284462

2-(1H-Indol-3-yl)acetohydrazide.

Lala Rukh Sidra1, Islam Ullah Khan, Muhammad Yar, Jim Simpson.   

Abstract

In the title compound C(10)H(11)N(3)O, the mean plane of the indole ring system (r.m.s. deviation 0.0131 Å) subtends a dihedral angle of 87.27 (5)° to the almost planar acetohydrazide substituent (r.m.s. deviation 0.0291 Å). In the crystal, bifurcated N-H⋯(O,N) and N-H⋯N hydrogen bonds involving the pyrrole N-H grouping combine to form zigzag chains along a. Additional N-H⋯O contacts from the hydrazide N-H group augmented by C-H⋯π inter-actions link the mol-ecules into chains along the a axis. The overall effect of these contacts is a three-dimensional network structure with mol-ecules stacked along the b-axis direction.

Entities:  

Year:  2012        PMID: 23284462      PMCID: PMC3515242          DOI: 10.1107/S1600536812041694

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of hydrazides in the synthesis of heterocyclic compounds, see: Narayana et al. (2005a ▶,b ▶) and in the production of pharmaceuticals, see: Liu et al. (2006 ▶). For related structures, see: Butcher et al. (2007 ▶); Hou (2009 ▶); Li & Ban (2009 ▶); Sarojini et al. (2007a ▶,b ▶,c ▶,d ▶).

Experimental

Crystal data

C10H11N3O M = 189.22 Orthorhombic, a = 12.1599 (7) Å b = 9.6153 (4) Å c = 16.2345 (8) Å V = 1898.16 (16) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.17 × 0.14 × 0.11 mm

Data collection

Bruker APEXII CCD area detector diffractometer 8600 measured reflections 2329 independent reflections 1294 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.122 S = 1.00 2329 reflections 139 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.16 e Å−3 Data collection: APEX2 (Bruker 2005 ▶); cell refinement: APEX2 and SAINT (Bruker 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and Mercury (Macrae et al., 2008 ▶); software used to prepare material for publication: SHELXL97, enCIFer (Allen et al., 2004 ▶), PLATON (Spek, 2009 ▶), publCIF (Westrip 2010 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812041694/hg5253sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812041694/hg5253Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812041694/hg5253Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H11N3OF(000) = 800
Mr = 189.22Dx = 1.324 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 1251 reflections
a = 12.1599 (7) Åθ = 3.0–22.1°
b = 9.6153 (4) ŵ = 0.09 mm1
c = 16.2345 (8) ÅT = 296 K
V = 1898.16 (16) Å3Prism, colorless
Z = 80.17 × 0.14 × 0.11 mm
Bruker APEXII CCD area detector diffractometer1294 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.039
Graphite monochromatorθmax = 28.3°, θmin = 3.0°
φ and ω scansh = −16→14
8600 measured reflectionsk = −12→12
2329 independent reflectionsl = −20→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.0512P)2 + 0.1536P] where P = (Fo2 + 2Fc2)/3
2329 reflections(Δ/σ)max < 0.001
139 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.51122 (13)0.27482 (16)0.60889 (11)0.0549 (5)
H1N0.5591 (17)0.321 (2)0.5893 (12)0.066*
C10.45025 (15)0.30809 (17)0.67668 (12)0.0463 (5)
C20.46525 (18)0.4106 (2)0.73576 (14)0.0615 (6)
H20.52510.47070.73350.074*
C30.3892 (2)0.4202 (2)0.79725 (14)0.0683 (6)
H30.39800.48780.83770.082*
C40.29916 (19)0.3318 (2)0.80094 (13)0.0664 (6)
H40.24790.34280.84300.080*
C50.28434 (16)0.22822 (19)0.74347 (12)0.0542 (5)
H50.22420.16870.74660.065*
C60.36154 (14)0.21440 (16)0.68030 (11)0.0418 (4)
C70.37296 (14)0.12255 (16)0.61199 (11)0.0437 (4)
C80.46342 (15)0.16439 (18)0.57039 (12)0.0512 (5)
H80.48940.12350.52220.061*
C90.29943 (16)0.00197 (17)0.59225 (12)0.0526 (5)
H9A0.2600−0.02430.64180.063*
H9B0.3448−0.07640.57620.063*
C100.21718 (14)0.02925 (16)0.52500 (11)0.0404 (4)
O100.18296 (11)0.14649 (11)0.50855 (8)0.0575 (4)
N20.18364 (13)−0.08386 (15)0.48613 (10)0.0505 (4)
H2N0.2143 (16)−0.165 (2)0.4996 (11)0.061*
N30.09921 (17)−0.07433 (16)0.42677 (12)0.0631 (5)
H3N10.1226 (17)−0.128 (2)0.3824 (13)0.076*
H3N20.0381 (19)−0.125 (2)0.4406 (14)0.076*
U11U22U33U12U13U23
N10.0422 (9)0.0513 (10)0.0711 (12)−0.0088 (7)0.0042 (9)0.0060 (9)
C10.0431 (10)0.0411 (9)0.0548 (11)−0.0031 (7)−0.0091 (9)0.0057 (9)
C20.0620 (14)0.0526 (11)0.0699 (15)−0.0112 (10)−0.0161 (12)−0.0005 (10)
C30.0867 (17)0.0570 (13)0.0612 (14)0.0031 (12)−0.0161 (13)−0.0101 (11)
C40.0741 (15)0.0708 (14)0.0542 (13)0.0138 (12)0.0036 (11)0.0026 (11)
C50.0498 (11)0.0527 (11)0.0600 (12)−0.0022 (9)0.0011 (10)0.0136 (10)
C60.0415 (9)0.0341 (8)0.0497 (10)0.0006 (7)−0.0065 (8)0.0085 (8)
C70.0442 (10)0.0335 (8)0.0534 (11)0.0010 (7)−0.0056 (9)0.0087 (8)
C80.0537 (11)0.0422 (10)0.0577 (12)0.0064 (8)0.0021 (10)0.0009 (9)
C90.0625 (12)0.0328 (9)0.0624 (12)−0.0039 (8)−0.0095 (10)0.0070 (8)
C100.0444 (10)0.0282 (8)0.0485 (10)−0.0012 (7)0.0029 (8)0.0015 (7)
O100.0671 (9)0.0300 (6)0.0752 (9)0.0049 (6)−0.0198 (7)−0.0020 (6)
N20.0627 (10)0.0292 (8)0.0594 (10)0.0020 (7)−0.0114 (9)−0.0020 (7)
N30.0782 (13)0.0455 (10)0.0656 (12)−0.0004 (8)−0.0177 (11)−0.0082 (8)
N1—C81.362 (2)C6—C71.425 (2)
N1—C11.365 (3)C7—C81.352 (2)
N1—H1N0.80 (2)C7—C91.499 (2)
C1—C21.387 (3)C8—H80.9300
C1—C61.407 (2)C9—C101.504 (2)
C2—C31.364 (3)C9—H9A0.9700
C2—H20.9300C9—H9B0.9700
C3—C41.388 (3)C10—O101.2310 (18)
C3—H30.9300C10—N21.322 (2)
C4—C51.377 (3)N2—N31.411 (2)
C4—H40.9300N2—H2N0.89 (2)
C5—C61.397 (2)N3—H3N10.93 (2)
C5—H50.9300N3—H3N20.92 (2)
C8—N1—C1108.72 (15)C8—C7—C6106.48 (15)
C8—N1—H1N124.2 (15)C8—C7—C9127.50 (18)
C1—N1—H1N125.9 (15)C6—C7—C9126.01 (16)
N1—C1—C2130.74 (18)C7—C8—N1110.48 (17)
N1—C1—C6107.46 (16)C7—C8—H8124.8
C2—C1—C6121.79 (18)N1—C8—H8124.8
C3—C2—C1117.75 (19)C7—C9—C10114.65 (14)
C3—C2—H2121.1C7—C9—H9A108.6
C1—C2—H2121.1C10—C9—H9A108.6
C2—C3—C4121.66 (19)C7—C9—H9B108.6
C2—C3—H3119.2C10—C9—H9B108.6
C4—C3—H3119.2H9A—C9—H9B107.6
C5—C4—C3121.2 (2)O10—C10—N2123.07 (16)
C5—C4—H4119.4O10—C10—C9122.82 (15)
C3—C4—H4119.4N2—C10—C9114.10 (14)
C4—C5—C6118.58 (18)C10—N2—N3119.81 (15)
C4—C5—H5120.7C10—N2—H2N118.4 (12)
C6—C5—H5120.7N3—N2—H2N121.8 (12)
C5—C6—C1119.03 (17)N2—N3—H3N1105.6 (13)
C5—C6—C7134.12 (16)N2—N3—H3N2112.8 (15)
C1—C6—C7106.84 (16)H3N1—N3—H3N297.9 (18)
C8—N1—C1—C2179.29 (19)C5—C6—C7—C8177.68 (18)
C8—N1—C1—C60.1 (2)C1—C6—C7—C8−1.15 (18)
N1—C1—C2—C3179.47 (19)C5—C6—C7—C9−3.4 (3)
C6—C1—C2—C3−1.5 (3)C1—C6—C7—C9177.72 (16)
C1—C2—C3—C4−0.5 (3)C6—C7—C8—N11.3 (2)
C2—C3—C4—C51.6 (3)C9—C7—C8—N1−177.58 (16)
C3—C4—C5—C6−0.7 (3)C1—N1—C8—C7−0.9 (2)
C4—C5—C6—C1−1.2 (2)C8—C7—C9—C10−79.8 (2)
C4—C5—C6—C7−179.92 (18)C6—C7—C9—C10101.5 (2)
N1—C1—C6—C5−178.42 (15)C7—C9—C10—O10−26.0 (3)
C2—C1—C6—C52.3 (3)C7—C9—C10—N2155.06 (17)
N1—C1—C6—C70.62 (18)O10—C10—N2—N3−4.6 (3)
C2—C1—C6—C7−178.61 (16)C9—C10—N2—N3174.30 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1N···O10i0.80 (2)2.21 (2)2.927 (2)149.4 (19)
N1—H1N···N3i0.80 (2)2.50 (2)3.126 (2)136.6 (19)
N2—H2N···O10ii0.89 (2)2.20 (2)3.0799 (19)166.3 (17)
C9—H9A···Cg2iii0.972.733.644 (2)157
Table 1

Hydrogen-bond geometry (Å, °)

Cg2 is the centroid of the C1–C6 benzene ring.

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1N⋯O10i 0.80 (2)2.21 (2)2.927 (2)149.4 (19)
N1—H1N⋯N3i 0.80 (2)2.50 (2)3.126 (2)136.6 (19)
N2—H2N⋯O10ii 0.89 (2)2.20 (2)3.0799 (19)166.3 (17)
C9—H9ACg2iii 0.972.733.644 (2)157

Symmetry codes: (i) ; (ii) ; (iii) .

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