| Literature DB >> 23284462 |
Lala Rukh Sidra1, Islam Ullah Khan, Muhammad Yar, Jim Simpson.
Abstract
In the title compound C(10)H(11)N(3)O, the mean plane of the indole ring system (r.m.s. deviation 0.0131 Å) subtends a dihedral angle of 87.27 (5)° to the almost planar acetohydrazide substituent (r.m.s. deviation 0.0291 Å). In the crystal, bifurcated N-H⋯(O,N) and N-H⋯N hydrogen bonds involving the pyrrole N-H grouping combine to form zigzag chains along a. Additional N-H⋯O contacts from the hydrazide N-H group augmented by C-H⋯π inter-actions link the mol-ecules into chains along the a axis. The overall effect of these contacts is a three-dimensional network structure with mol-ecules stacked along the b-axis direction.Entities:
Year: 2012 PMID: 23284462 PMCID: PMC3515242 DOI: 10.1107/S1600536812041694
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C10H11N3O | |
| Orthorhombic, | Mo |
| Hall symbol: -P 2ac 2ab | Cell parameters from 1251 reflections |
| θ = 3.0–22.1° | |
| µ = 0.09 mm−1 | |
| Prism, colorless | |
| 0.17 × 0.14 × 0.11 mm |
| Bruker APEXII CCD area detector diffractometer | 1294 reflections with |
| Radiation source: fine-focus sealed tube | |
| Graphite monochromator | θmax = 28.3°, θmin = 3.0° |
| φ and ω scans | |
| 8600 measured reflections | |
| 2329 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 2329 reflections | (Δ/σ)max < 0.001 |
| 139 parameters | Δρmax = 0.16 e Å−3 |
| 0 restraints | Δρmin = −0.16 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.51122 (13) | 0.27482 (16) | 0.60889 (11) | 0.0549 (5) | |
| H1N | 0.5591 (17) | 0.321 (2) | 0.5893 (12) | 0.066* | |
| C1 | 0.45025 (15) | 0.30809 (17) | 0.67668 (12) | 0.0463 (5) | |
| C2 | 0.46525 (18) | 0.4106 (2) | 0.73576 (14) | 0.0615 (6) | |
| H2 | 0.5251 | 0.4707 | 0.7335 | 0.074* | |
| C3 | 0.3892 (2) | 0.4202 (2) | 0.79725 (14) | 0.0683 (6) | |
| H3 | 0.3980 | 0.4878 | 0.8377 | 0.082* | |
| C4 | 0.29916 (19) | 0.3318 (2) | 0.80094 (13) | 0.0664 (6) | |
| H4 | 0.2479 | 0.3428 | 0.8430 | 0.080* | |
| C5 | 0.28434 (16) | 0.22822 (19) | 0.74347 (12) | 0.0542 (5) | |
| H5 | 0.2242 | 0.1687 | 0.7466 | 0.065* | |
| C6 | 0.36154 (14) | 0.21440 (16) | 0.68030 (11) | 0.0418 (4) | |
| C7 | 0.37296 (14) | 0.12255 (16) | 0.61199 (11) | 0.0437 (4) | |
| C8 | 0.46342 (15) | 0.16439 (18) | 0.57039 (12) | 0.0512 (5) | |
| H8 | 0.4894 | 0.1235 | 0.5222 | 0.061* | |
| C9 | 0.29943 (16) | 0.00197 (17) | 0.59225 (12) | 0.0526 (5) | |
| H9A | 0.2600 | −0.0243 | 0.6418 | 0.063* | |
| H9B | 0.3448 | −0.0764 | 0.5762 | 0.063* | |
| C10 | 0.21718 (14) | 0.02925 (16) | 0.52500 (11) | 0.0404 (4) | |
| O10 | 0.18296 (11) | 0.14649 (11) | 0.50855 (8) | 0.0575 (4) | |
| N2 | 0.18364 (13) | −0.08386 (15) | 0.48613 (10) | 0.0505 (4) | |
| H2N | 0.2143 (16) | −0.165 (2) | 0.4996 (11) | 0.061* | |
| N3 | 0.09921 (17) | −0.07433 (16) | 0.42677 (12) | 0.0631 (5) | |
| H3N1 | 0.1226 (17) | −0.128 (2) | 0.3824 (13) | 0.076* | |
| H3N2 | 0.0381 (19) | −0.125 (2) | 0.4406 (14) | 0.076* |
| N1 | 0.0422 (9) | 0.0513 (10) | 0.0711 (12) | −0.0088 (7) | 0.0042 (9) | 0.0060 (9) |
| C1 | 0.0431 (10) | 0.0411 (9) | 0.0548 (11) | −0.0031 (7) | −0.0091 (9) | 0.0057 (9) |
| C2 | 0.0620 (14) | 0.0526 (11) | 0.0699 (15) | −0.0112 (10) | −0.0161 (12) | −0.0005 (10) |
| C3 | 0.0867 (17) | 0.0570 (13) | 0.0612 (14) | 0.0031 (12) | −0.0161 (13) | −0.0101 (11) |
| C4 | 0.0741 (15) | 0.0708 (14) | 0.0542 (13) | 0.0138 (12) | 0.0036 (11) | 0.0026 (11) |
| C5 | 0.0498 (11) | 0.0527 (11) | 0.0600 (12) | −0.0022 (9) | 0.0011 (10) | 0.0136 (10) |
| C6 | 0.0415 (9) | 0.0341 (8) | 0.0497 (10) | 0.0006 (7) | −0.0065 (8) | 0.0085 (8) |
| C7 | 0.0442 (10) | 0.0335 (8) | 0.0534 (11) | 0.0010 (7) | −0.0056 (9) | 0.0087 (8) |
| C8 | 0.0537 (11) | 0.0422 (10) | 0.0577 (12) | 0.0064 (8) | 0.0021 (10) | 0.0009 (9) |
| C9 | 0.0625 (12) | 0.0328 (9) | 0.0624 (12) | −0.0039 (8) | −0.0095 (10) | 0.0070 (8) |
| C10 | 0.0444 (10) | 0.0282 (8) | 0.0485 (10) | −0.0012 (7) | 0.0029 (8) | 0.0015 (7) |
| O10 | 0.0671 (9) | 0.0300 (6) | 0.0752 (9) | 0.0049 (6) | −0.0198 (7) | −0.0020 (6) |
| N2 | 0.0627 (10) | 0.0292 (8) | 0.0594 (10) | 0.0020 (7) | −0.0114 (9) | −0.0020 (7) |
| N3 | 0.0782 (13) | 0.0455 (10) | 0.0656 (12) | −0.0004 (8) | −0.0177 (11) | −0.0082 (8) |
| N1—C8 | 1.362 (2) | C6—C7 | 1.425 (2) |
| N1—C1 | 1.365 (3) | C7—C8 | 1.352 (2) |
| N1—H1N | 0.80 (2) | C7—C9 | 1.499 (2) |
| C1—C2 | 1.387 (3) | C8—H8 | 0.9300 |
| C1—C6 | 1.407 (2) | C9—C10 | 1.504 (2) |
| C2—C3 | 1.364 (3) | C9—H9A | 0.9700 |
| C2—H2 | 0.9300 | C9—H9B | 0.9700 |
| C3—C4 | 1.388 (3) | C10—O10 | 1.2310 (18) |
| C3—H3 | 0.9300 | C10—N2 | 1.322 (2) |
| C4—C5 | 1.377 (3) | N2—N3 | 1.411 (2) |
| C4—H4 | 0.9300 | N2—H2N | 0.89 (2) |
| C5—C6 | 1.397 (2) | N3—H3N1 | 0.93 (2) |
| C5—H5 | 0.9300 | N3—H3N2 | 0.92 (2) |
| C8—N1—C1 | 108.72 (15) | C8—C7—C6 | 106.48 (15) |
| C8—N1—H1N | 124.2 (15) | C8—C7—C9 | 127.50 (18) |
| C1—N1—H1N | 125.9 (15) | C6—C7—C9 | 126.01 (16) |
| N1—C1—C2 | 130.74 (18) | C7—C8—N1 | 110.48 (17) |
| N1—C1—C6 | 107.46 (16) | C7—C8—H8 | 124.8 |
| C2—C1—C6 | 121.79 (18) | N1—C8—H8 | 124.8 |
| C3—C2—C1 | 117.75 (19) | C7—C9—C10 | 114.65 (14) |
| C3—C2—H2 | 121.1 | C7—C9—H9A | 108.6 |
| C1—C2—H2 | 121.1 | C10—C9—H9A | 108.6 |
| C2—C3—C4 | 121.66 (19) | C7—C9—H9B | 108.6 |
| C2—C3—H3 | 119.2 | C10—C9—H9B | 108.6 |
| C4—C3—H3 | 119.2 | H9A—C9—H9B | 107.6 |
| C5—C4—C3 | 121.2 (2) | O10—C10—N2 | 123.07 (16) |
| C5—C4—H4 | 119.4 | O10—C10—C9 | 122.82 (15) |
| C3—C4—H4 | 119.4 | N2—C10—C9 | 114.10 (14) |
| C4—C5—C6 | 118.58 (18) | C10—N2—N3 | 119.81 (15) |
| C4—C5—H5 | 120.7 | C10—N2—H2N | 118.4 (12) |
| C6—C5—H5 | 120.7 | N3—N2—H2N | 121.8 (12) |
| C5—C6—C1 | 119.03 (17) | N2—N3—H3N1 | 105.6 (13) |
| C5—C6—C7 | 134.12 (16) | N2—N3—H3N2 | 112.8 (15) |
| C1—C6—C7 | 106.84 (16) | H3N1—N3—H3N2 | 97.9 (18) |
| C8—N1—C1—C2 | 179.29 (19) | C5—C6—C7—C8 | 177.68 (18) |
| C8—N1—C1—C6 | 0.1 (2) | C1—C6—C7—C8 | −1.15 (18) |
| N1—C1—C2—C3 | 179.47 (19) | C5—C6—C7—C9 | −3.4 (3) |
| C6—C1—C2—C3 | −1.5 (3) | C1—C6—C7—C9 | 177.72 (16) |
| C1—C2—C3—C4 | −0.5 (3) | C6—C7—C8—N1 | 1.3 (2) |
| C2—C3—C4—C5 | 1.6 (3) | C9—C7—C8—N1 | −177.58 (16) |
| C3—C4—C5—C6 | −0.7 (3) | C1—N1—C8—C7 | −0.9 (2) |
| C4—C5—C6—C1 | −1.2 (2) | C8—C7—C9—C10 | −79.8 (2) |
| C4—C5—C6—C7 | −179.92 (18) | C6—C7—C9—C10 | 101.5 (2) |
| N1—C1—C6—C5 | −178.42 (15) | C7—C9—C10—O10 | −26.0 (3) |
| C2—C1—C6—C5 | 2.3 (3) | C7—C9—C10—N2 | 155.06 (17) |
| N1—C1—C6—C7 | 0.62 (18) | O10—C10—N2—N3 | −4.6 (3) |
| C2—C1—C6—C7 | −178.61 (16) | C9—C10—N2—N3 | 174.30 (17) |
| H··· | ||||
| N1—H1 | 0.80 (2) | 2.21 (2) | 2.927 (2) | 149.4 (19) |
| N1—H1 | 0.80 (2) | 2.50 (2) | 3.126 (2) | 136.6 (19) |
| N2—H2 | 0.89 (2) | 2.20 (2) | 3.0799 (19) | 166.3 (17) |
| C9—H9 | 0.97 | 2.73 | 3.644 (2) | 157 |
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C1–C6 benzene ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.80 (2) | 2.21 (2) | 2.927 (2) | 149.4 (19) |
| N1—H1 | 0.80 (2) | 2.50 (2) | 3.126 (2) | 136.6 (19) |
| N2—H2 | 0.89 (2) | 2.20 (2) | 3.0799 (19) | 166.3 (17) |
| C9—H9 | 0.97 | 2.73 | 3.644 (2) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) .