Literature DB >> 23284435

3-[(2-Chloro-1,3-thia-zol-5-yl)meth-yl]-5-methyl-1,3,5-oxadiazinan-4-one.

Rajni Kant1, Vivek K Gupta, Kamini Kapoor, Chetan S Shripanavar, Kaushik Banerjee.   

Abstract

In the title compound, C(8)H(10)ClN(3)O(2)S, the oxadiazinane ring is in a sofa conformation with the ring O atom deviating from the best plane of the remaining five atoms by 0.636 (2) Å. A short intra-molecular C-S⋯O=C contact [S⋯O 3.122 (2) Å, C-S⋯O 80.0 (2)°] is observed between the two mol-ecular fragments bridged by the methyl-ene group. In the crystal, C-H⋯O hydrogen bonds link mol-ecules, forming chains along the b axis.

Entities:  

Year:  2012        PMID: 23284435      PMCID: PMC3515215          DOI: 10.1107/S1600536812042031

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of thia­methoxam, see: Maienfisch et al. (2001 ▶, 2006 ▶); Suchail et al. (2001 ▶); Ford & Casida (2006 ▶). For the structure of thia­methoxam, see: Chopra et al. (2004 ▶). For ring conformations, see: Duax & Norton (1975 ▶).

Experimental

Crystal data

C8H10ClN3O2S M = 247.70 Orthorhombic, a = 4.6141 (2) Å b = 11.7335 (4) Å c = 20.1460 (8) Å V = 1090.70 (7) Å3 Z = 4 Mo Kα radiation μ = 0.53 mm−1 T = 293 K 0.3 × 0.2 × 0.2 mm

Data collection

Oxford Diffraction Xcalibur Sapphire3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010 ▶) T min = 0.925, T max = 1.000 22323 measured reflections 2147 independent reflections 1974 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.031 wR(F 2) = 0.081 S = 1.07 2147 reflections 137 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.16 e Å−3 Absolute structure: Flack (1983 ▶), 856 Friedel pairs Flack parameter: 0.04 (9) Data collection: CrysAlis PRO (Oxford Diffraction, 2010 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536812042031/gk2519sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042031/gk2519Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536812042031/gk2519Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10ClN3O2SF(000) = 512
Mr = 247.70Dx = 1.508 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 11280 reflections
a = 4.6141 (2) Åθ = 3.5–29.0°
b = 11.7335 (4) ŵ = 0.53 mm1
c = 20.1460 (8) ÅT = 293 K
V = 1090.70 (7) Å3Needle, white
Z = 40.3 × 0.2 × 0.2 mm
Oxford Diffraction Xcalibur Sapphire3 diffractometer2147 independent reflections
Radiation source: fine-focus sealed tube1974 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
Detector resolution: 16.1049 pixels mm-1θmax = 26.0°, θmin = 3.5°
ω scanh = −5→5
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2010)k = −14→14
Tmin = 0.925, Tmax = 1.000l = −24→24
22323 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.031H-atom parameters constrained
wR(F2) = 0.081w = 1/[σ2(Fo2) + (0.0399P)2 + 0.2799P] where P = (Fo2 + 2Fc2)/3
S = 1.07(Δ/σ)max = 0.001
2147 reflectionsΔρmax = 0.22 e Å3
137 parametersΔρmin = −0.16 e Å3
0 restraintsAbsolute structure: Flack (1983), 856 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.04 (9)
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.34.40 (release 27–08-2010 CrysAlis171. NET) (compiled Aug 27 2010,11:50:40) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.29172 (13)0.85031 (5)0.83926 (3)0.04611 (15)
Cl10.64157 (15)0.83860 (6)0.96232 (3)0.0642 (2)
O10.4809 (4)1.08899 (16)0.64448 (10)0.0653 (5)
C20.2262 (7)1.1021 (2)0.68003 (16)0.0668 (8)
H2A0.08441.14120.65270.080*
H2B0.26301.14870.71890.080*
N30.1108 (5)0.99332 (17)0.70052 (10)0.0512 (5)
C40.1836 (6)0.8940 (2)0.67011 (12)0.0516 (6)
N50.3433 (6)0.90503 (19)0.61443 (11)0.0640 (6)
C60.4364 (9)1.0158 (3)0.59173 (14)0.0778 (9)
H6A0.61491.00790.56670.093*
H6B0.29051.04750.56240.093*
C7−0.0657 (6)0.9905 (3)0.76014 (14)0.0613 (7)
H7A−0.20480.92890.75640.074*
H7B−0.17341.06130.76340.074*
O70.1066 (5)0.80128 (15)0.69297 (10)0.0744 (6)
C80.4470 (9)0.8075 (3)0.57872 (19)0.0975 (12)
H8A0.38720.73920.60120.146*
H8B0.65470.80980.57650.146*
H8C0.36840.80800.53460.146*
C90.1052 (5)0.9747 (2)0.82176 (12)0.0494 (6)
C100.4123 (5)0.9127 (2)0.91085 (12)0.0484 (6)
N110.3276 (6)1.01443 (19)0.92255 (12)0.0692 (7)
C120.1516 (7)1.0488 (2)0.87096 (15)0.0680 (8)
H120.06831.12100.87040.082*
U11U22U33U12U13U23
S10.0529 (3)0.0353 (2)0.0501 (3)0.0000 (2)0.0022 (2)0.0000 (2)
Cl10.0651 (4)0.0728 (4)0.0546 (4)−0.0027 (4)−0.0063 (3)0.0091 (3)
O10.0633 (11)0.0579 (11)0.0748 (12)−0.0128 (9)−0.0003 (10)0.0120 (10)
C20.0732 (18)0.0395 (12)0.088 (2)0.0011 (13)0.0047 (16)0.0129 (13)
N30.0552 (12)0.0421 (10)0.0563 (12)−0.0002 (9)0.0042 (10)0.0105 (9)
C40.0570 (13)0.0446 (11)0.0533 (14)−0.0083 (11)−0.0123 (13)0.0084 (11)
N50.0871 (17)0.0551 (13)0.0499 (12)−0.0056 (13)0.0064 (12)−0.0020 (10)
C60.102 (3)0.079 (2)0.0529 (17)−0.0165 (19)0.0084 (16)0.0135 (15)
C70.0480 (14)0.0691 (16)0.0669 (17)0.0082 (13)0.0019 (12)0.0110 (14)
O70.1021 (17)0.0435 (9)0.0775 (13)−0.0221 (11)−0.0017 (13)0.0082 (9)
C80.121 (3)0.089 (2)0.083 (2)0.003 (2)0.011 (2)−0.025 (2)
C90.0472 (13)0.0450 (12)0.0561 (14)0.0058 (10)0.0112 (11)0.0061 (11)
C100.0505 (13)0.0459 (13)0.0487 (13)−0.0061 (11)0.0058 (11)0.0009 (10)
N110.0892 (19)0.0501 (12)0.0683 (15)0.0053 (13)0.0002 (14)−0.0144 (11)
C120.087 (2)0.0429 (14)0.0741 (19)0.0176 (14)0.0026 (17)−0.0061 (12)
S1—C101.710 (2)N5—C61.443 (4)
S1—C91.731 (2)C6—H6A0.9700
Cl1—C101.718 (3)C6—H6B0.9700
O1—C61.382 (4)C7—C91.482 (4)
O1—C21.385 (4)C7—H7A0.9700
C2—N31.443 (3)C7—H7B0.9700
C2—H2A0.9700C8—H8A0.9600
C2—H2B0.9700C8—H8B0.9600
N3—C41.359 (3)C8—H8C0.9600
N3—C71.452 (3)C9—C121.336 (4)
C4—O71.233 (3)C10—N111.278 (3)
C4—N51.348 (3)N11—C121.379 (4)
N5—C81.434 (4)C12—H120.9300
C10—S1—C988.42 (12)N3—C7—C9113.4 (2)
C6—O1—C2109.9 (2)N3—C7—H7A108.9
O1—C2—N3111.3 (2)C9—C7—H7A108.9
O1—C2—H2A109.4N3—C7—H7B108.9
N3—C2—H2A109.4C9—C7—H7B108.9
O1—C2—H2B109.4H7A—C7—H7B107.7
N3—C2—H2B109.4N5—C8—H8A109.5
H2A—C2—H2B108.0N5—C8—H8B109.5
C4—N3—C2122.6 (2)H8A—C8—H8B109.5
C4—N3—C7119.5 (2)N5—C8—H8C109.5
C2—N3—C7117.6 (2)H8A—C8—H8C109.5
O7—C4—N5123.6 (2)H8B—C8—H8C109.5
O7—C4—N3121.1 (2)C12—C9—C7128.7 (2)
N5—C4—N3115.3 (2)C12—C9—S1108.5 (2)
C4—N5—C8121.5 (3)C7—C9—S1122.7 (2)
C4—N5—C6120.9 (2)N11—C10—S1117.1 (2)
C8—N5—C6117.4 (3)N11—C10—Cl1123.4 (2)
O1—C6—N5111.1 (2)S1—C10—Cl1119.52 (14)
O1—C6—H6A109.4C10—N11—C12108.3 (2)
N5—C6—H6A109.4C9—C12—N11117.6 (2)
O1—C6—H6B109.4C9—C12—H12121.2
N5—C6—H6B109.4N11—C12—H12121.2
H6A—C6—H6B108.0
C6—O1—C2—N354.5 (3)C4—N3—C7—C985.9 (3)
O1—C2—N3—C4−20.9 (4)C2—N3—C7—C9−87.9 (3)
O1—C2—N3—C7152.7 (2)N3—C7—C9—C12111.4 (3)
C2—N3—C4—O7172.1 (3)N3—C7—C9—S1−66.6 (3)
C7—N3—C4—O7−1.3 (4)C10—S1—C9—C12−0.2 (2)
C2—N3—C4—N5−7.7 (4)C10—S1—C9—C7178.1 (2)
C7—N3—C4—N5178.8 (2)C9—S1—C10—N110.3 (2)
O7—C4—N5—C8−2.7 (5)C9—S1—C10—Cl1−178.75 (16)
N3—C4—N5—C8177.2 (3)S1—C10—N11—C12−0.2 (3)
O7—C4—N5—C6−177.5 (3)Cl1—C10—N11—C12178.8 (2)
N3—C4—N5—C62.4 (4)C7—C9—C12—N11−178.0 (3)
C2—O1—C6—N5−59.9 (4)S1—C9—C12—N110.2 (4)
C4—N5—C6—O131.4 (4)C10—N11—C12—C90.0 (4)
C8—N5—C6—O1−143.6 (3)
D—H···AD—HH···AD···AD—H···A
C12—H12···O7i0.932.603.443 (3)151
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C12—H12⋯O7i 0.932.603.443 (3)151

Symmetry code: (i) .

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