Literature DB >> 23284427

Ethyl 7-methyl-2-((1-methyl-1H-pyrrol-2-yl)methyl-ene)-3-oxo-5-phenyl-3,5-dihydro-2H-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Jie Hu1, Xi-Xi Wu, Xue-Qian Shen, Long-Guang Tang, Xiao-Kun Li.   

Abstract

In the structure of the title compound, C(22)H(21)N(3)O(3)S, the thia-zole ring forms dihedral angles of 88.83 (7) and 9.39 (9)°, respectively, with the benzene and pyrrole rings. The dihydro-pyrimidine ring adopts a flattened boat conformation. The olefinic double bond is in a Z conformation.

Entities:  

Year:  2012        PMID: 23284427      PMCID: PMC3515200          DOI: 10.1107/S1600536812041748

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Hou (2009 ▶); Zhao et al. (2011 ▶). For background to the biological properties of fused thia­zolo[3,2-a]pyrimidine derivatives, see: Ashok et al. (2007 ▶); Bahekar & Shinde (2004 ▶); Hurst & Hull (1961 ▶); Mehta et al. (2006 ▶); Shah & Desai (2007 ▶); Srivastava et al. (2006 ▶); Subudhi et al. (2007 ▶); Magerramov et al. (2006 ▶); Zhou et al. (2008 ▶).

Experimental

Crystal data

C22H21N3O3S M = 407.48 Monoclinic, a = 11.8187 (10) Å b = 10.2911 (9) Å c = 16.2290 (14) Å β = 90.584 (2)° V = 1973.8 (3) Å3 Z = 4 Mo Kα radiation μ = 0.19 mm−1 T = 293 K 0.32 × 0.24 × 0.16 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2002 ▶) T min = 0.814, T max = 1.000 10415 measured reflections 3877 independent reflections 3433 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.109 S = 1.05 3877 reflections 265 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.19 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536812041748/aa2075sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812041748/aa2075Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H21N3O3SF(000) = 856
Mr = 407.48Dx = 1.371 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4867 reflections
a = 11.8187 (10) Åθ = 5.0–56.3°
b = 10.2911 (9) ŵ = 0.19 mm1
c = 16.2290 (14) ÅT = 293 K
β = 90.584 (2)°Prismatic, red
V = 1973.8 (3) Å30.32 × 0.24 × 0.16 mm
Z = 4
Bruker SMART CCD area-detector diffractometer3877 independent reflections
Radiation source: fine-focus sealed tube3433 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
phi and ω scansθmax = 26.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2002)h = −14→14
Tmin = 0.814, Tmax = 1.000k = −12→11
10415 measured reflectionsl = −20→19
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0574P)2 + 0.5784P] where P = (Fo2 + 2Fc2)/3
3877 reflections(Δ/σ)max < 0.001
265 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.45859 (3)0.25287 (4)0.01131 (2)0.04128 (14)
N10.36364 (10)0.46192 (12)0.06560 (7)0.0318 (3)
N20.26786 (11)0.35881 (14)−0.04481 (8)0.0402 (3)
N30.76832 (11)0.15037 (14)0.18041 (8)0.0413 (3)
O10.48083 (10)0.52724 (11)0.17107 (8)0.0471 (3)
O20.05024 (13)0.69653 (15)−0.05111 (10)0.0735 (5)
O30.14144 (10)0.76092 (11)0.06154 (7)0.0473 (3)
C10.45910 (12)0.45135 (15)0.11618 (9)0.0337 (3)
C20.52334 (12)0.33419 (15)0.09404 (9)0.0343 (3)
C30.34879 (12)0.36725 (15)0.00763 (9)0.0338 (3)
C40.19135 (13)0.46391 (15)−0.04784 (9)0.0362 (3)
C50.19370 (12)0.56033 (15)0.00841 (9)0.0336 (3)
C60.27014 (12)0.55164 (14)0.08448 (9)0.0316 (3)
H60.30140.63790.09650.038*
C70.20515 (11)0.50354 (15)0.15961 (9)0.0330 (3)
C80.16948 (14)0.59098 (18)0.21843 (10)0.0446 (4)
H80.18830.67840.21380.054*
C90.10566 (17)0.5486 (2)0.28426 (11)0.0588 (5)
H90.08090.60810.32330.071*
C100.07856 (16)0.4197 (2)0.29245 (11)0.0573 (5)
H100.03600.39190.33700.069*
C110.11433 (15)0.3322 (2)0.23496 (11)0.0520 (4)
H110.09670.24460.24060.062*
C120.17686 (14)0.37389 (17)0.16826 (10)0.0422 (4)
H120.20010.31410.12890.051*
C130.11228 (15)0.45209 (19)−0.12025 (11)0.0485 (4)
H13A0.05020.5112−0.11370.073*
H13B0.08400.3648−0.12350.073*
H13C0.15200.4728−0.16990.073*
C140.12023 (13)0.67570 (16)0.00121 (10)0.0396 (4)
C150.07470 (16)0.87886 (19)0.05991 (13)0.0561 (5)
H15A−0.00340.85910.07270.067*
H15B0.07680.91730.00540.067*
C160.1209 (2)0.9705 (3)0.12081 (18)0.0907 (9)
H16A0.11360.93450.17510.136*
H16B0.07991.05090.11760.136*
H16C0.19930.98610.10960.136*
C170.61539 (12)0.29575 (16)0.13690 (10)0.0371 (3)
H170.64110.35290.17730.045*
C180.67851 (12)0.17881 (16)0.12828 (10)0.0384 (4)
C190.66600 (15)0.07268 (18)0.07624 (12)0.0503 (4)
H190.61230.06430.03430.060*
C200.74750 (17)−0.01876 (19)0.09753 (13)0.0572 (5)
H200.7581−0.09940.07290.069*
C210.80908 (15)0.03176 (18)0.16125 (12)0.0516 (4)
H210.8697−0.00910.18750.062*
C220.81581 (16)0.23339 (19)0.24420 (13)0.0548 (5)
H22A0.87050.18530.27600.082*
H22B0.75650.26280.27960.082*
H22C0.85180.30690.21920.082*
U11U22U33U12U13U23
S10.0416 (2)0.0415 (2)0.0407 (2)0.01238 (17)−0.00433 (17)−0.00727 (16)
N10.0271 (6)0.0325 (7)0.0358 (6)0.0032 (5)−0.0009 (5)−0.0010 (5)
N20.0418 (7)0.0412 (8)0.0373 (7)0.0070 (6)−0.0067 (6)−0.0036 (6)
N30.0334 (7)0.0417 (8)0.0488 (8)0.0044 (6)−0.0002 (6)0.0088 (6)
O10.0408 (6)0.0430 (7)0.0573 (7)0.0047 (5)−0.0145 (5)−0.0128 (6)
O20.0766 (10)0.0619 (9)0.0813 (10)0.0293 (8)−0.0421 (8)−0.0117 (8)
O30.0500 (7)0.0418 (7)0.0499 (7)0.0171 (5)−0.0098 (5)−0.0021 (5)
C10.0281 (7)0.0335 (8)0.0396 (8)−0.0014 (6)−0.0007 (6)0.0012 (6)
C20.0296 (7)0.0346 (8)0.0388 (8)0.0004 (6)0.0019 (6)0.0010 (6)
C30.0346 (7)0.0338 (8)0.0331 (7)0.0041 (6)0.0019 (6)0.0005 (6)
C40.0334 (7)0.0393 (8)0.0359 (7)0.0015 (6)−0.0023 (6)0.0039 (6)
C50.0289 (7)0.0357 (8)0.0363 (7)0.0019 (6)−0.0008 (6)0.0055 (6)
C60.0283 (7)0.0288 (7)0.0376 (8)0.0036 (6)−0.0016 (6)−0.0014 (6)
C70.0263 (7)0.0398 (8)0.0328 (7)0.0047 (6)−0.0051 (6)−0.0007 (6)
C80.0474 (9)0.0451 (10)0.0413 (9)0.0062 (8)−0.0028 (7)−0.0075 (7)
C90.0566 (11)0.0806 (15)0.0395 (9)0.0131 (10)0.0064 (8)−0.0122 (9)
C100.0463 (10)0.0845 (16)0.0412 (9)0.0007 (10)0.0076 (8)0.0094 (9)
C110.0436 (9)0.0572 (11)0.0554 (10)−0.0039 (8)0.0033 (8)0.0114 (9)
C120.0403 (8)0.0430 (9)0.0433 (9)0.0009 (7)0.0033 (7)−0.0006 (7)
C130.0467 (9)0.0545 (11)0.0442 (9)0.0063 (8)−0.0121 (7)−0.0035 (8)
C140.0358 (8)0.0402 (9)0.0427 (8)0.0044 (7)−0.0033 (7)0.0062 (7)
C150.0539 (11)0.0439 (10)0.0703 (12)0.0189 (8)−0.0066 (9)−0.0017 (9)
C160.0925 (18)0.0751 (17)0.1037 (19)0.0376 (14)−0.0330 (15)−0.0384 (14)
C170.0305 (7)0.0371 (8)0.0437 (8)0.0001 (6)−0.0004 (6)0.0003 (7)
C180.0294 (7)0.0393 (9)0.0465 (9)0.0029 (6)0.0007 (6)0.0054 (7)
C190.0444 (9)0.0479 (10)0.0584 (11)0.0083 (8)−0.0045 (8)−0.0052 (8)
C200.0566 (11)0.0425 (10)0.0725 (13)0.0140 (9)0.0016 (10)−0.0040 (9)
C210.0438 (9)0.0447 (10)0.0663 (12)0.0142 (8)0.0024 (8)0.0129 (9)
C220.0479 (10)0.0532 (11)0.0628 (12)0.0022 (8)−0.0167 (9)0.0072 (9)
S1—C21.7515 (15)C9—H90.9300
S1—C31.7525 (15)C10—C111.367 (3)
N1—C31.3644 (19)C10—H100.9300
N1—C11.3927 (18)C11—C121.385 (2)
N1—C61.4747 (18)C11—H110.9300
N2—C31.2767 (19)C12—H120.9300
N2—C41.410 (2)C13—H13A0.9600
N3—C211.350 (2)C13—H13B0.9600
N3—C181.382 (2)C13—H13C0.9600
N3—C221.451 (2)C15—C161.467 (3)
O1—C11.2103 (18)C15—H15A0.9700
O2—C141.1986 (19)C15—H15B0.9700
O3—C141.336 (2)C16—H16A0.9600
O3—C151.448 (2)C16—H16B0.9600
C1—C21.471 (2)C16—H16C0.9600
C2—C171.345 (2)C17—C181.424 (2)
C4—C51.348 (2)C17—H170.9300
C4—C131.499 (2)C18—C191.388 (2)
C5—C141.475 (2)C19—C201.388 (3)
C5—C61.525 (2)C19—H190.9300
C6—C71.530 (2)C20—C211.362 (3)
C6—H60.9800C20—H200.9300
C7—C81.381 (2)C21—H210.9300
C7—C121.383 (2)C22—H22A0.9600
C8—C91.384 (3)C22—H22B0.9600
C8—H80.9300C22—H22C0.9600
C9—C101.371 (3)
C2—S1—C391.30 (7)C7—C12—C11120.65 (16)
C3—N1—C1116.64 (12)C7—C12—H12119.7
C3—N1—C6119.93 (12)C11—C12—H12119.7
C1—N1—C6122.05 (12)C4—C13—H13A109.5
C3—N2—C4116.54 (13)C4—C13—H13B109.5
C21—N3—C18108.92 (15)H13A—C13—H13B109.5
C21—N3—C22124.10 (15)C4—C13—H13C109.5
C18—N3—C22126.96 (14)H13A—C13—H13C109.5
C14—O3—C15116.02 (13)H13B—C13—H13C109.5
O1—C1—N1123.23 (14)O2—C14—O3121.64 (15)
O1—C1—C2127.04 (14)O2—C14—C5126.98 (16)
N1—C1—C2109.69 (12)O3—C14—C5111.37 (13)
C17—C2—C1122.10 (14)O3—C15—C16109.13 (16)
C17—C2—S1126.93 (13)O3—C15—H15A109.9
C1—C2—S1110.87 (10)C16—C15—H15A109.9
N2—C3—N1126.75 (14)O3—C15—H15B109.9
N2—C3—S1121.76 (12)C16—C15—H15B109.9
N1—C3—S1111.48 (10)H15A—C15—H15B108.3
C5—C4—N2122.14 (13)C15—C16—H16A109.5
C5—C4—C13126.79 (15)C15—C16—H16B109.5
N2—C4—C13111.07 (14)H16A—C16—H16B109.5
C4—C5—C14122.06 (14)C15—C16—H16C109.5
C4—C5—C6120.85 (13)H16A—C16—H16C109.5
C14—C5—C6117.05 (13)H16B—C16—H16C109.5
N1—C6—C5107.91 (11)C2—C17—C18128.30 (15)
N1—C6—C7110.27 (12)C2—C17—H17115.8
C5—C6—C7111.47 (11)C18—C17—H17115.8
N1—C6—H6109.0N3—C18—C19106.40 (14)
C5—C6—H6109.0N3—C18—C17121.26 (15)
C7—C6—H6109.0C19—C18—C17132.26 (15)
C8—C7—C12118.85 (15)C18—C19—C20108.23 (17)
C8—C7—C6119.96 (15)C18—C19—H19125.9
C12—C7—C6121.13 (13)C20—C19—H19125.9
C7—C8—C9120.06 (18)C21—C20—C19107.12 (17)
C7—C8—H8120.0C21—C20—H20126.4
C9—C8—H8120.0C19—C20—H20126.4
C10—C9—C8120.59 (18)N3—C21—C20109.33 (16)
C10—C9—H9119.7N3—C21—H21125.3
C8—C9—H9119.7C20—C21—H21125.3
C11—C10—C9119.81 (17)N3—C22—H22A109.5
C11—C10—H10120.1N3—C22—H22B109.5
C9—C10—H10120.1H22A—C22—H22B109.5
C10—C11—C12120.04 (19)N3—C22—H22C109.5
C10—C11—H11120.0H22A—C22—H22C109.5
C12—C11—H11120.0H22B—C22—H22C109.5
C3—N1—C1—O1−178.40 (14)C5—C6—C7—C8−101.17 (16)
C6—N1—C1—O1−11.8 (2)N1—C6—C7—C12−43.80 (18)
C3—N1—C1—C2−0.46 (18)C5—C6—C7—C1276.03 (17)
C6—N1—C1—C2166.11 (12)C12—C7—C8—C9−0.6 (2)
O1—C1—C2—C172.4 (2)C6—C7—C8—C9176.68 (15)
N1—C1—C2—C17−175.41 (14)C7—C8—C9—C100.9 (3)
O1—C1—C2—S1179.05 (14)C8—C9—C10—C11−0.3 (3)
N1—C1—C2—S11.22 (15)C9—C10—C11—C12−0.6 (3)
C3—S1—C2—C17175.15 (15)C8—C7—C12—C11−0.3 (2)
C3—S1—C2—C1−1.27 (11)C6—C7—C12—C11−177.55 (14)
C4—N2—C3—N15.9 (2)C10—C11—C12—C70.9 (3)
C4—N2—C3—S1−173.22 (11)C15—O3—C14—O20.3 (2)
C1—N1—C3—N2−179.70 (15)C15—O3—C14—C5179.36 (14)
C6—N1—C3—N213.4 (2)C4—C5—C14—O22.3 (3)
C1—N1—C3—S1−0.50 (16)C6—C5—C14—O2−175.46 (18)
C6—N1—C3—S1−167.38 (10)C4—C5—C14—O3−176.79 (14)
C2—S1—C3—N2−179.73 (14)C6—C5—C14—O35.49 (19)
C2—S1—C3—N11.03 (11)C14—O3—C15—C16−170.47 (19)
C3—N2—C4—C5−8.6 (2)C1—C2—C17—C18172.86 (15)
C3—N2—C4—C13170.92 (14)S1—C2—C17—C18−3.2 (3)
N2—C4—C5—C14174.67 (14)C21—N3—C18—C19−0.08 (18)
C13—C4—C5—C14−4.7 (2)C22—N3—C18—C19178.08 (16)
N2—C4—C5—C6−7.7 (2)C21—N3—C18—C17177.00 (14)
C13—C4—C5—C6172.92 (15)C22—N3—C18—C17−4.8 (2)
C3—N1—C6—C5−26.08 (17)C2—C17—C18—N3−176.53 (15)
C1—N1—C6—C5167.78 (13)C2—C17—C18—C19−0.3 (3)
C3—N1—C6—C795.89 (15)N3—C18—C19—C200.3 (2)
C1—N1—C6—C7−70.25 (17)C17—C18—C19—C20−176.32 (17)
C4—C5—C6—N123.55 (19)C18—C19—C20—C21−0.4 (2)
C14—C5—C6—N1−158.71 (12)C18—N3—C21—C20−0.2 (2)
C4—C5—C6—C7−97.67 (16)C22—N3—C21—C20−178.41 (17)
C14—C5—C6—C780.07 (16)C19—C20—C21—N30.4 (2)
N1—C6—C7—C8139.00 (14)
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Authors:  E W HURST; R HULL
Journal:  J Med Pharm Chem       Date:  1961-03-01

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Authors:  Mithun Ashok; Bantwal Shivarama Holla; Nalilu Suchetha Kumari
Journal:  Eur J Med Chem       Date:  2006-10-27       Impact factor: 6.514

3.  Design, synthesis, cytoselective toxicity, structure-activity relationships, and pharmacophore of thiazolidinone derivatives targeting drug-resistant lung cancer cells.

Authors:  Hongyu Zhou; Shuhong Wu; Shumei Zhai; Aifeng Liu; Ying Sun; Rongshi Li; Ying Zhang; Sean Ekins; Peter W Swaan; Bingliang Fang; Bin Zhang; Bing Yan
Journal:  J Med Chem       Date:  2008-02-08       Impact factor: 7.446

4.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

5.  (2Z)-Ethyl 5-(4-methoxy-phen-yl)-7-methyl-3-oxo-2-(3,4,5-trimethoxy-benzyl-idene)-3,5-dihydro-2H-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Zhao-Hui Hou
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08

6.  Synthesis and anti-inflammatory activity of some [4,6-(4-substituted aryl)-2-thioxo-1,2,3,4-tetrahydro-pyrimidin-5-yl]-acetic acid derivatives.

Authors:  Sushilkumar S Bahekar; Devanand B Shinde
Journal:  Bioorg Med Chem Lett       Date:  2004-04-05       Impact factor: 2.823

7.  Ethyl (Z)-2-(2-fluoro-benzyl-idene)-7-methyl-3-oxo-5-phenyl-3,5-dihydro-2H-thia-zolo[3,2-a]pyrimidine-6-carboxyl-ate.

Authors:  Cheng-Guang Zhao; Jie Hu; Ya-Li Zhang; Jing Zhang; Shu-Lin Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22
  7 in total

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