Literature DB >> 23284369

trans-Bis[4-amino-N-(pyrimidin-2-yl-κN)benzene-sulfonamidato-κN]bis(N,N-dimethyl-formamide-κO)cobalt(II).

Jing Jing Guo1, Wei Wang, Yi Dong Zhang, Li Yang, Shu Hua Zhang.   

Abstract

The title complex, [Co(C(10)H(9)N(4)O(2)S)(2)(C(3)H(7)NO)(2)], lies across an inversion center. The Co(II) atom is coordinated in a slightly distorted octa-hedral geometry by four N atoms from two bidentate 4-amino-N-(pyrimidin-2-yl)benzene-sulfonamidate (sulfadiazine) anions and two O atoms from two dimethyl-formamide (DMF) ligands. The dihedral angle between the benzene and pyrimidine rings is 82.37 (13)°. A three-dimensional network is generated by N-H⋯O hydrogen bonds between the amino groups and of the sulfonamidate O atoms of neighbouring mol-ecules. The DMF ligand is disordered over two sets of sites in a 0.559 (4):0.441 (4) ratio.

Entities:  

Year:  2012        PMID: 23284369      PMCID: PMC3515142          DOI: 10.1107/S160053681204336X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to sulfonamides, see: Connor (1998 ▶). For background to metal complexes of sulfadiazine, see: Wang et al. (2009 ▶, 2010 ▶); Ajibade et al. (2006 ▶); Hossain et al. (2011 ▶); Tommasino et al. (2011 ▶); Ghosh et al. (2011 ▶).

Experimental

Crystal data

[Co(C10H9N4O2S)2(C3H7NO)2] M = 703.67 Monoclinic, a = 8.9008 (6) Å b = 11.2078 (6) Å c = 16.5565 (9) Å β = 102.147 (6)° V = 1614.67 (16) Å3 Z = 2 Mo Kα radiation μ = 0.72 mm−1 T = 298 K 0.28 × 0.25 × 0.20 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.815, T max = 0.869 13220 measured reflections 3495 independent reflections 2989 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.095 S = 0.99 3495 reflections 222 parameters 36 restraints H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.35 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S160053681204336X/wm2693sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681204336X/wm2693Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C10H9N4O2S)2(C3H7NO)2]F(000) = 730
Mr = 703.67Dx = 1.447 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 4388 reflections
a = 8.9008 (6) Åθ = 3.0–28.7°
b = 11.2078 (6) ŵ = 0.72 mm1
c = 16.5565 (9) ÅT = 298 K
β = 102.147 (6)°Block, red
V = 1614.67 (16) Å30.28 × 0.25 × 0.20 mm
Z = 2
Bruker SMART CCD diffractometer3495 independent reflections
Radiation source: fine-focus sealed tube2989 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.028
Detector resolution: 0 pixels mm-1θmax = 27.0°, θmin = 3.0°
phi and ω scansh = −11→11
Absorption correction: multi-scan (SADABS; Bruker, 2001)k = −14→13
Tmin = 0.815, Tmax = 0.869l = −21→19
13220 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.095w = 1/[σ2(Fo2) + (0.0311P)2 + 1.5416P] where P = (Fo2 + 2Fc2)/3
S = 0.99(Δ/σ)max < 0.001
3495 reflectionsΔρmax = 0.33 e Å3
222 parametersΔρmin = −0.35 e Å3
36 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0012 (1)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.4095 (3)0.9002 (2)0.13724 (16)0.0476 (6)
H1A0.44470.93440.09350.057*
C20.3251 (2)0.7957 (2)0.12498 (14)0.0363 (5)
C30.2761 (3)0.7454 (3)0.19139 (15)0.0507 (6)
H3A0.22120.67420.18430.061*
C40.3079 (3)0.7994 (3)0.26800 (16)0.0572 (7)
H4A0.27440.76400.31190.069*
C50.3892 (3)0.9061 (3)0.28047 (16)0.0508 (7)
C60.4421 (3)0.9543 (3)0.21390 (17)0.0568 (7)
H6A0.50021.02400.22130.068*
C7−0.0153 (2)0.73277 (19)0.00525 (13)0.0319 (5)
C8−0.1683 (3)0.8945 (2)−0.00174 (16)0.0438 (6)
H8A−0.18080.97670.00050.053*
C9−0.2982 (3)0.8242 (2)−0.01745 (18)0.0513 (7)
H9A−0.39610.8573−0.02600.062*
C10−0.2766 (3)0.7031 (2)−0.01992 (17)0.0497 (6)
H10A−0.36160.6528−0.02930.060*
Co10.00000.50000.00000.03466 (14)
N1−0.1368 (2)0.65637 (17)−0.00916 (13)0.0402 (5)
N20.1174 (2)0.66834 (16)0.01562 (12)0.0350 (4)
N3−0.0252 (2)0.85105 (17)0.01044 (12)0.0372 (4)
N40.4124 (3)0.9634 (3)0.35511 (15)0.0724 (8)
H4B0.37650.93350.39500.087*
H4C0.46291.02940.36210.087*
O20.29575 (19)0.81638 (15)−0.03312 (10)0.0437 (4)
O30.38724 (19)0.62601 (16)0.02969 (12)0.0519 (5)
S10.28414 (6)0.72636 (5)0.02742 (3)0.03470 (15)
O10.0274 (19)0.4809 (16)0.1263 (12)0.053 (2)0.559 (4)
C11−0.0332 (9)0.5365 (7)0.1739 (6)0.0563 (17)0.559 (4)
H11A−0.12250.56300.13880.084*0.559 (4)
C13−0.1386 (10)0.6711 (8)0.2810 (5)0.107 (2)0.559 (4)
H13A−0.11340.67640.34020.160*0.559 (4)
H13B−0.12180.74710.25770.160*0.559 (4)
H13C−0.24460.64890.26320.160*0.559 (4)
C120.0603 (12)0.5055 (8)0.3034 (5)0.098 (2)0.559 (4)
H12A0.12860.43970.32040.147*0.559 (4)
H12B0.10080.57580.33340.147*0.559 (4)
H12C−0.03880.48760.31450.147*0.559 (4)
N5−0.0499 (7)0.5829 (5)0.2463 (3)0.0665 (13)0.559 (4)
O1'−0.009 (3)0.501 (2)0.1318 (16)0.053 (2)0.441 (4)
C11'−0.0812 (12)0.5748 (10)0.1647 (7)0.0563 (17)0.441 (4)
H11B−0.17480.61280.13750.084*0.441 (4)
C13'0.1448 (14)0.4546 (11)0.2886 (6)0.107 (2)0.441 (4)
H13D0.17830.40350.24930.160*0.441 (4)
H13E0.22740.50650.31340.160*0.441 (4)
H13F0.11460.40680.33060.160*0.441 (4)
C12'−0.0588 (13)0.5888 (10)0.3139 (5)0.098 (2)0.441 (4)
H12D−0.03790.59330.37310.147*0.441 (4)
H12E−0.03820.66480.29160.147*0.441 (4)
H12F−0.16470.56810.29370.147*0.441 (4)
N5'0.0174 (10)0.5244 (7)0.2573 (5)0.0665 (13)0.441 (4)
U11U22U33U12U13U23
C10.0493 (14)0.0501 (15)0.0422 (13)−0.0135 (12)0.0066 (11)0.0020 (12)
C20.0331 (11)0.0383 (12)0.0342 (11)−0.0024 (9)−0.0004 (9)0.0011 (10)
C30.0565 (15)0.0515 (16)0.0409 (13)−0.0211 (13)0.0031 (11)0.0010 (12)
C40.0653 (17)0.0698 (19)0.0340 (13)−0.0220 (15)0.0047 (12)0.0016 (13)
C50.0473 (14)0.0605 (17)0.0386 (13)−0.0069 (12)−0.0049 (11)−0.0041 (12)
C60.0605 (17)0.0523 (16)0.0527 (16)−0.0222 (14)0.0006 (13)−0.0068 (13)
C70.0351 (11)0.0280 (11)0.0313 (11)−0.0031 (9)0.0038 (9)−0.0032 (9)
C80.0448 (13)0.0333 (12)0.0533 (15)0.0049 (10)0.0103 (11)−0.0007 (11)
C90.0366 (12)0.0485 (15)0.0697 (18)0.0047 (11)0.0130 (12)0.0027 (13)
C100.0359 (13)0.0469 (15)0.0657 (17)−0.0097 (11)0.0095 (12)−0.0025 (13)
Co10.0448 (3)0.0246 (2)0.0328 (2)−0.00372 (17)0.00405 (18)−0.00398 (17)
N10.0384 (10)0.0322 (10)0.0489 (12)−0.0077 (8)0.0066 (9)−0.0043 (9)
N20.0353 (9)0.0254 (9)0.0416 (10)−0.0006 (7)0.0021 (8)−0.0041 (8)
N30.0375 (10)0.0269 (9)0.0457 (11)−0.0010 (8)0.0056 (8)−0.0031 (8)
N40.0836 (18)0.0854 (19)0.0428 (13)−0.0255 (16)0.0012 (13)−0.0148 (13)
O20.0474 (9)0.0473 (10)0.0369 (9)−0.0027 (8)0.0099 (7)0.0049 (8)
O30.0441 (9)0.0492 (11)0.0617 (11)0.0162 (8)0.0092 (8)−0.0004 (9)
S10.0324 (3)0.0339 (3)0.0365 (3)0.0030 (2)0.0044 (2)0.0001 (2)
O10.078 (7)0.052 (5)0.033 (2)−0.005 (4)0.020 (4)−0.008 (3)
C110.062 (4)0.067 (4)0.041 (2)−0.019 (3)0.014 (3)−0.008 (3)
C130.140 (5)0.126 (5)0.068 (3)0.001 (4)0.051 (3)0.000 (3)
C120.128 (5)0.118 (5)0.049 (3)−0.017 (4)0.020 (3)−0.012 (3)
N50.089 (3)0.070 (3)0.0436 (18)−0.019 (2)0.021 (2)−0.007 (2)
O1'0.078 (7)0.052 (5)0.033 (2)−0.005 (4)0.020 (4)−0.008 (3)
C11'0.062 (4)0.067 (4)0.041 (2)−0.019 (3)0.014 (3)−0.008 (3)
C13'0.140 (5)0.126 (5)0.068 (3)0.001 (4)0.051 (3)0.000 (3)
C12'0.128 (5)0.118 (5)0.049 (3)−0.017 (4)0.020 (3)−0.012 (3)
N5'0.089 (3)0.070 (3)0.0436 (18)−0.019 (2)0.021 (2)−0.007 (2)
C1—C61.381 (4)Co1—O1'2.20 (2)
C1—C21.383 (3)N2—S11.5941 (18)
C1—H1A0.9300N4—H4B0.8600
C2—C31.385 (3)N4—H4C0.8600
C2—S11.760 (2)O2—S11.4412 (17)
C3—C41.380 (4)O3—S11.4470 (17)
C3—H3A0.9300O1—C111.216 (13)
C4—C51.390 (4)C11—N51.342 (10)
C4—H4A0.9300C11—H11A0.9300
C5—N41.370 (3)C13—N51.457 (9)
C5—C61.396 (4)C13—H13A0.9602
C6—H6A0.9300C13—H13B0.9597
C7—N31.333 (3)C13—H13C0.9600
C7—N11.360 (3)C13—H12E0.8765
C7—N21.364 (3)C12—N51.489 (11)
C8—N31.339 (3)C12—H12A0.9599
C8—C91.378 (3)C12—H12B0.9600
C8—H8A0.9300C12—H12C0.9601
C9—C101.373 (4)O1'—C11'1.244 (17)
C9—H9A0.9300C11'—N5'1.694 (14)
C10—N11.327 (3)C11'—H11B0.9593
C10—H10A0.9300C13'—N5'1.386 (13)
Co1—O1i2.065 (19)C13'—H13D0.9600
Co1—O12.065 (19)C13'—H13E0.9600
Co1—N12.121 (2)C13'—H13F0.9600
Co1—N1i2.121 (2)C12'—N5'1.458 (13)
Co1—N22.1460 (18)C12'—H12D0.9597
Co1—N2i2.1460 (18)C12'—H12E0.9601
Co1—O1'i2.20 (2)C12'—H12F0.9601
C6—C1—C2120.6 (2)N5—C13—H13B107.4
C6—C1—H1A119.7H13A—C13—H13B109.5
C2—C1—H1A119.7N5—C13—H13C106.4
C1—C2—C3118.7 (2)H13A—C13—H13C109.4
C1—C2—S1120.66 (19)H13B—C13—H13C109.5
C3—C2—S1120.62 (18)N5—C13—H12E53.8
C4—C3—C2120.9 (2)H13A—C13—H12E77.9
C4—C3—H3A119.6H13B—C13—H12E85.1
C2—C3—H3A119.6H13C—C13—H12E159.2
C3—C4—C5120.9 (3)N5—C13—H12F63.8
C3—C4—H4A119.6H13A—C13—H12F83.9
C5—C4—H4A119.6H13B—C13—H12F166.5
N4—C5—C4120.8 (3)H13C—C13—H12F65.9
N4—C5—C6121.2 (3)H12E—C13—H12F96.5
C4—C5—C6117.9 (2)N5—C12—H12A157.8
C1—C6—C5121.0 (2)N5—C12—H12B88.6
C1—C6—H6A119.5H12A—C12—H12B109.5
C5—C6—H6A119.5N5—C12—H12C74.6
N3—C7—N1125.2 (2)H12A—C12—H12C109.5
N3—C7—N2125.86 (19)H12B—C12—H12C109.5
N1—C7—N2108.91 (19)N5—C12—H13E125.9
N3—C8—C9123.7 (2)H12A—C12—H13E53.6
N3—C8—H8A118.2H12B—C12—H13E70.9
C9—C8—H8A118.2H12C—C12—H13E159.1
C10—C9—C8117.0 (2)N5—C12—H13F153.6
C10—C9—H9A121.5H12B—C12—H13F117.7
C8—C9—H9A121.5H12C—C12—H13F92.7
N1—C10—C9121.3 (2)H13E—C12—H13F70.1
N1—C10—H10A119.3C11—N5—C13141.8 (7)
C9—C10—H10A119.3C11—N5—C1299.2 (6)
O1i—Co1—O1180.0 (10)C13—N5—C12119.0 (6)
O1i—Co1—N184.2 (3)C11—N5—H12E149.4
O1—Co1—N195.8 (3)C12—N5—H12E95.2
O1i—Co1—N1i95.8 (3)C11—N5—H12F132.3
O1—Co1—N1i84.2 (3)C13—N5—H12F49.4
N1—Co1—N1i180.00 (11)C12—N5—H12F92.0
O1i—Co1—N289.0 (6)H12E—N5—H12F73.5
O1—Co1—N291.0 (6)C11'—O1'—Co1124.5 (17)
N1—Co1—N262.59 (7)O1'—C11'—N5'87.5 (14)
N1i—Co1—N2117.41 (7)O1'—C11'—H11B124.6
O1i—Co1—N2i91.0 (6)N5'—C11'—H11B143.7
O1—Co1—N2i89.0 (6)N5'—C13'—H12A99.0
N1—Co1—N2i117.41 (7)N5'—C13'—H13D115.4
N1i—Co1—N2i62.59 (7)H12A—C13'—H13D126.7
N2—Co1—N2i180.0N5'—C13'—H13E108.1
O1i—Co1—O1'i10.6 (8)H12A—C13'—H13E95.5
O1—Co1—O1'i169.4 (8)H13D—C13'—H13E109.5
N1—Co1—O1'i94.1 (5)N5'—C13'—H13F104.7
N1i—Co1—O1'i85.9 (5)H13D—C13'—H13F109.5
N2—Co1—O1'i90.2 (7)H13E—C13'—H13F109.5
N2i—Co1—O1'i89.8 (7)N5'—C12'—H13A154.8
O1i—Co1—O1'169.4 (8)N5'—C12'—H12B60.6
O1—Co1—O1'10.6 (8)H13A—C12'—H12B117.7
N1—Co1—O1'85.9 (5)N5'—C12'—H12C54.9
N1i—Co1—O1'94.1 (5)H13A—C12'—H12C150.1
N2—Co1—O1'89.8 (7)H12B—C12'—H12C75.3
N2i—Co1—O1'90.2 (7)N5'—C12'—H12D131.7
O1'i—Co1—O1'180.000 (3)H13A—C12'—H12D66.3
C10—N1—C7117.6 (2)H12B—C12'—H12D78.5
C10—N1—Co1147.50 (17)H12C—C12'—H12D92.6
C7—N1—Co194.85 (14)N5'—C12'—H12E92.3
C7—N2—S1123.96 (15)H13A—C12'—H12E62.9
C7—N2—Co193.64 (13)H12B—C12'—H12E85.1
S1—N2—Co1142.24 (11)H12C—C12'—H12E146.9
C7—N3—C8115.21 (19)H12D—C12'—H12E109.5
C5—N4—H4B120.0N5'—C12'—H12F102.2
C5—N4—H4C120.0H13A—C12'—H12F83.3
H4B—N4—H4C120.0H12B—C12'—H12F158.7
O2—S1—O3115.11 (11)H12C—C12'—H12F84.4
O2—S1—N2113.67 (10)H12D—C12'—H12F109.5
O3—S1—N2104.78 (10)H12E—C12'—H12F109.5
O2—S1—C2107.31 (11)C13'—N5'—C12'119.6 (8)
O3—S1—C2108.17 (11)C13'—N5'—C11'138.9 (8)
N2—S1—C2107.48 (10)C12'—N5'—C11'101.2 (8)
C11—O1—Co1129.0 (12)C13'—N5'—H12B70.6
O1—C11—N5157.5 (12)C12'—N5'—H12B57.6
O1—C11—H11A101.2C11'—N5'—H12B137.0
N5—C11—H11A101.2C13'—N5'—H12C87.5
O1—C11—H11B118.0C12'—N5'—H12C49.6
N5—C11—H11B84.2C11'—N5'—H12C126.1
N5—C13—H13A114.5H12B—N5'—H12C71.3
D—H···AD—HH···AD···AD—H···A
N4—H4B···O3ii0.862.313.112 (3)155
N4—H4C···O3iii0.862.272.951 (3)136
Table 1

Selected bond lengths (Å)

Co1—O12.065 (19)
Co1—N12.121 (2)
Co1—N22.1460 (18)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N4—H4B⋯O3i 0.862.313.112 (3)155
N4—H4C⋯O3ii 0.862.272.951 (3)136

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  trans-Bis[4-amino-N-(pyrimidin-2-yl)benzene-sulfonamidato]dipyridine-cobalt(II) hemihydrate.

Authors:  Yan-Fei Wang; Hong-Li Zou; Xu-Jian Luo; Zhen-Feng Chen; Hong Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-21

3.  trans-Bis[4-amino-N-(pyrimidin-2-yl)benzene-sulfonamidato]dipyridine-nickel(II) hemihydrate.

Authors:  Yan-Fei Wang; Fu-Xing Li; Yan Peng; Zhen-Feng Chen; Hong Liang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-14

4.  Bis[4-amino-N-(pyrimidin-2-yl)benzene-sulfonamidato]-κN,N';κN-aqua-bis-(dimethyl-formamide-κO)cadmium(II) monohydrate.

Authors:  G M Golzar Hossain
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-05-28
  4 in total

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