Literature DB >> 23284355

Bis(acetato-κ(2)O,O')(4,4'-dimethyl-2,2'-bipyridine-κ(2)N,N')-zinc.

Miguel A Harvey1, Sebastian A Suarez, Andres Ibañez, Fabio Doctorovich, Ricardo Baggio.   

Abstract

The mol-ecular structure of the title compound, [Zn(CH(3)COO)(2)(C(12)H(12)N(2))], consists of isolated mol-ecules bis-ected by a twofold rotation axis which goes through the Zn(II) cation and halves the organic base through the central C-C bond. The Zn(II) ion is coordinated by two N atoms from one mol-ecule of the aromatic base and four O atoms from two bidentate, symmetry-related acetate anions, which coordinate asym-metrically [Zn-O distances of 2.058 (2) and 2.362 (3) Å], while the two Zn-N bond distances are equal as imposed by symmetry [2.079 (2) Å]. The crystal structure is supported by a number of weak C-H⋯O inter-actions and C-H⋯π contacts, with no π-π inter-actions present, mainly hindered by the substituent methyl groups and the relative mol-ecular orientation. The result is a three-dimensional structure in which each mol-ecule is linked to eight different neighbors.

Entities:  

Year:  2012        PMID: 23284355      PMCID: PMC3515128          DOI: 10.1107/S1600536812042699

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For properties of polypyridyl compounds, see: Steed & Atwood (2009 ▶). For related structures, see: Barquín et al. (2010 ▶). For details of the vectorial bond–valence model, see Harvey et al. (2006 ▶).

Experimental

Crystal data

[Zn(C2H3O2)2(C12H12N2)] M = 367.71 Orthorhombic, a = 14.4779 (5) Å b = 28.5700 (15) Å c = 8.0854 (3) Å V = 3344.4 (2) Å3 Z = 8 Mo Kα radiation μ = 1.49 mm−1 T = 295 K 0.3 × 0.3 × 0.2 mm

Data collection

Oxford Diffraction Gemini CCD S Ultra diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009 ▶) T min = 0.65, T max = 0.75 3945 measured reflections 1563 independent reflections 1481 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.026 wR(F 2) = 0.068 S = 1.09 1563 reflections 107 parameters 1 restraint H-atom parameters constrained Δρmax = 0.28 e Å−3 Δρmin = −0.26 e Å−3 Absolute structure: Flack (1983 ▶), 374 Friedel pairs Flack parameter: 0.010 (16) Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009) ▶. Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812042699/br2212sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812042699/br2212Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C2H3O2)2(C12H12N2)]F(000) = 1520
Mr = 367.71Dx = 1.461 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 1985 reflections
a = 14.4779 (5) Åθ = 3.6–28.9°
b = 28.5700 (15) ŵ = 1.49 mm1
c = 8.0854 (3) ÅT = 295 K
V = 3344.4 (2) Å3Prism, white
Z = 80.3 × 0.3 × 0.2 mm
Oxford Diffraction Gemini CCD S Ultra diffractometer1481 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.015
ω scans, thick slicesθmax = 29.0°, θmin = 3.6°
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009)h = −17→18
Tmin = 0.65, Tmax = 0.75k = −37→17
3945 measured reflectionsl = −10→5
1563 independent reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.026H-atom parameters constrained
wR(F2) = 0.068w = 1/[σ2(Fo2) + (0.0402P)2 + 1.025P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
1563 reflectionsΔρmax = 0.28 e Å3
107 parametersΔρmin = −0.26 e Å3
1 restraintAbsolute structure: Flack (1983), 374 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.010 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn1000.08552 (5)0.04845 (13)
O1−0.10026 (14)0.03972 (8)−0.0279 (3)0.0745 (6)
N10.02563 (14)0.04418 (7)0.2846 (2)0.0456 (4)
O2−0.12535 (18)−0.03328 (9)−0.0599 (3)0.0843 (7)
C40.01794 (12)0.05180 (7)0.5779 (5)0.0421 (5)
H40.00710.0380.68030.051*
C7−0.14861 (19)0.00731 (10)−0.0837 (4)0.0548 (7)
C50.01168 (12)0.02544 (8)0.4354 (3)0.0361 (4)
C8−0.2331 (2)0.01806 (14)−0.1800 (9)0.0900 (14)
H8B−0.27770.0328−0.10930.135*
H8C−0.2584−0.0104−0.22380.135*
H8A−0.21780.0388−0.26940.135*
C30.04052 (15)0.09917 (8)0.5683 (4)0.0502 (5)
C10.0483 (2)0.08971 (10)0.2769 (4)0.0604 (7)
H10.05860.1030.17350.073*
C20.05697 (19)0.11722 (9)0.4128 (4)0.0607 (7)
H20.07410.14840.4010.073*
C60.0449 (2)0.12828 (10)0.7225 (4)0.0719 (9)
H6A0.07210.11030.81010.108*
H6C−0.01640.13760.75380.108*
H6B0.08180.15560.70240.108*
U11U22U33U12U13U23
Zn10.04289 (17)0.0737 (3)0.02871 (17)0.01368 (17)00
O10.0622 (11)0.0907 (14)0.0706 (15)−0.0028 (10)−0.0158 (11)−0.0093 (12)
N10.0478 (10)0.0549 (11)0.0342 (11)0.0047 (8)0.0032 (8)0.0080 (8)
O20.0909 (16)0.0871 (15)0.0749 (17)0.0313 (12)−0.0146 (13)−0.0022 (13)
C40.0424 (11)0.0480 (10)0.0361 (11)0.0034 (8)−0.0042 (16)0.0013 (12)
C70.0399 (12)0.0850 (19)0.0393 (14)0.0085 (11)0.0013 (10)−0.0056 (13)
C50.0329 (9)0.0459 (12)0.0296 (11)0.0036 (7)−0.0017 (8)0.0031 (9)
C80.061 (2)0.109 (3)0.100 (4)0.0012 (17)−0.037 (3)0.017 (3)
C30.0452 (10)0.0462 (11)0.0593 (16)0.0006 (9)−0.0095 (12)−0.0025 (12)
C10.0654 (15)0.0602 (15)0.0557 (18)−0.0014 (12)0.0060 (12)0.0240 (13)
C20.0621 (16)0.0440 (12)0.076 (2)−0.0032 (11)−0.0005 (14)0.0087 (14)
C60.080 (2)0.0559 (15)0.079 (2)−0.0007 (14)−0.0190 (17)−0.0158 (16)
Zn1—O1i2.058 (2)C4—H40.93
Zn1—O12.058 (2)C7—C81.482 (5)
Zn1—N12.079 (2)C5—C5i1.493 (4)
Zn1—N1i2.079 (2)C8—H8B0.96
Zn1—O22.362 (3)C8—H8C0.96
Zn1—O2i2.362 (3)C8—H8A0.96
Zn1—C72.558 (3)C3—C21.380 (4)
Zn1—C7i2.558 (3)C3—C61.500 (4)
O1—C71.246 (3)C1—C21.357 (4)
N1—C11.343 (3)C1—H10.93
N1—C51.347 (3)C2—H20.93
O2—C71.223 (3)C6—H6A0.96
C4—C51.380 (4)C6—H6C0.96
C4—C31.394 (3)C6—H6B0.96
O1i—Zn1—O1127.09 (15)C5—C4—C3119.9 (3)
O1i—Zn1—N1123.63 (9)C5—C4—H4120
O1—Zn1—N197.82 (8)C3—C4—H4120
O1i—Zn1—N1i97.82 (8)O2—C7—O1119.6 (3)
O1—Zn1—N1i123.63 (9)O2—C7—C8120.4 (3)
N1—Zn1—N1i78.52 (11)O1—C7—C8120.0 (3)
O1i—Zn1—O295.63 (10)O2—C7—Zn166.85 (17)
O1—Zn1—O257.21 (9)O1—C7—Zn152.72 (15)
N1—Zn1—O2140.08 (8)C8—C7—Zn1172.7 (2)
N1i—Zn1—O290.22 (9)N1—C5—C4122.0 (2)
O1i—Zn1—O2i57.21 (9)N1—C5—C5i114.92 (13)
O1—Zn1—O2i95.63 (10)C4—C5—C5i123.13 (15)
N1—Zn1—O2i90.22 (9)C7—C8—H8B109.5
N1i—Zn1—O2i140.08 (8)C7—C8—H8C109.5
O2—Zn1—O2i120.30 (15)H8B—C8—H8C109.5
O1i—Zn1—C7113.57 (9)C7—C8—H8A109.5
O1—Zn1—C728.79 (8)H8B—C8—H8A109.5
N1—Zn1—C7120.97 (8)H8C—C8—H8A109.5
N1i—Zn1—C7108.27 (9)C2—C3—C4117.0 (3)
O2—Zn1—C728.42 (8)C2—C3—C6122.9 (2)
O2i—Zn1—C7110.31 (10)C4—C3—C6120.1 (3)
O1i—Zn1—C7i28.79 (8)N1—C1—C2123.1 (2)
O1—Zn1—C7i113.57 (9)N1—C1—H1118.5
N1—Zn1—C7i108.27 (9)C2—C1—H1118.5
N1i—Zn1—C7i120.97 (8)C1—C2—C3120.4 (2)
O2—Zn1—C7i110.31 (10)C1—C2—H2119.8
O2i—Zn1—C7i28.42 (8)C3—C2—H2119.8
C7—Zn1—C7i115.34 (13)C3—C6—H6A109.5
C7—O1—Zn198.50 (18)C3—C6—H6C109.5
C1—N1—C5117.6 (2)H6A—C6—H6C109.5
C1—N1—Zn1126.56 (18)C3—C6—H6B109.5
C5—N1—Zn1115.64 (15)H6A—C6—H6B109.5
C7—O2—Zn184.73 (19)H6C—C6—H6B109.5
D—H···AD—HH···AD···AD—H···A
C2—H2···O1ii0.932.533.354 (4)147
C6—H6A···O2iii0.962.563.438 (4)153
C4—H4···Cg1iv0.932.993.874 (4)160
C4—H4···Cg1iii0.932.963.766 (4)145
C8—H8B···Cg2v0.962.963.804 (4)147
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the Zn1,O1,C7,O2 and N1,C1–C5 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O1i 0.932.533.354 (4)147
C6—H6A⋯O2ii 0.962.563.438 (4)153
C4—H4⋯Cg1iii 0.932.993.874 (4)160
C4—H4⋯Cg1ii 0.932.963.766 (4)145
C8—H8BCg2iv 0.962.963.804 (4)147

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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