Literature DB >> 23284353

μ-(2,2'-Bipyrimidine)-bis-[dichlorido-palladium(II)] dimethyl-formamide monosolvate.

Cyril Young1, Andreas Roodt, Barend C B Bezuidenhoudt.   

Abstract

In the title compound, [Pd(2)Cl(4)(C(8)H(6)N(4))]·C(3)H(7)NO, the two Pd(2+) cations have a distorted square-planar coordination sphere and are bridged by a bis-bidentate 2,2'-bipyrimidine ligand. Two terminal chloride anions are also bonded to each of the Pd(2+) cations. The dinuclear complex and the dimethylformamide solvate molecule lie on the inter-section of a twofold rotation axis and a mirror plane, with disorder present in the solvate mol-ecule. There is a slight distortion from the square-planar metal geometry, as indicated by the bite angles of 81.77 (13)° and 91.63 (5)°. The C and O atoms of the solvent mol-ecule are disordered over two sets of sites of equal occupancy.

Entities:  

Year:  2012        PMID: 23284353      PMCID: PMC3515126          DOI: 10.1107/S1600536812040779

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is structurally related to the mono-coord­inated species reported by Hudgens et al. (1997 ▶). For background literature on homogenous catalyst models, see: Van Leeuwen (2004 ▶); Meij et al. (2005 ▶); Otto et al. (2003 ▶); Steyn et al. (1997 ▶). For related structures, see: Inagaki et al. (2007 ▶); Maekawa et al. (1994 ▶). The mono-coordinated platinum counterpart was reported by Kawakami et al. (2006 ▶). For the synthetic procedure, see: Boyle et al. (2004 ▶).

Experimental

Crystal data

[Pd2Cl4(C8H6N4)]·C3H7NO M = 578.81 Monoclinic, a = 10.7299 (6) Å b = 14.2399 (7) Å c = 5.9381 (3) Å β = 108.229 (2)° V = 861.76 (8) Å3 Z = 2 Mo Kα radiation μ = 2.71 mm−1 T = 100 K 0.09 × 0.09 × 0.08 mm

Data collection

Bruker APEXII diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008) ▶ T min = 0.785, T max = 0.814 6102 measured reflections 1108 independent reflections 975 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.059 S = 1.11 1108 reflections 68 parameters H-atom parameters constrained Δρmax = 0.75 e Å−3 Δρmin = −0.79 e Å−3 Data collection: APEX2 (Bruker, 2008) ▶; cell refinement: SAINT-Plus (Bruker, 2008 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2005) ▶; software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536812040779/gg2102sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040779/gg2102Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Pd2Cl4(C8H6N4)]·C3H7NOF(000) = 550
Mr = 578.81Dx = 2.231 Mg m3
Monoclinic, C2/mMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2yCell parameters from 1958 reflections
a = 10.7299 (6) Åθ = 2.9–27.8°
b = 14.2399 (7) ŵ = 2.71 mm1
c = 5.9381 (3) ÅT = 100 K
β = 108.229 (2)°Cuboid, red
V = 861.76 (8) Å30.09 × 0.09 × 0.08 mm
Z = 2
Bruker APEXII diffractometer1108 independent reflections
Radiation source: sealed tube975 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.041
phi and ω scansθmax = 28.3°, θmin = 3.6°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −12→14
Tmin = 0.785, Tmax = 0.814k = −18→18
6102 measured reflectionsl = −7→7
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.059H-atom parameters constrained
S = 1.11w = 1/[σ2(Fo2) + (0.0172P)2 + 2.5414P] where P = (Fo2 + 2Fc2)/3
1108 reflections(Δ/σ)max < 0.001
68 parametersΔρmax = 0.75 e Å3
0 restraintsΔρmin = −0.79 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C110.50.4487 (3)0.50.0149 (8)
C120.5694 (3)0.3120 (2)0.6987 (6)0.0270 (8)
H120.61670.27930.83410.032*
C130.50.2637 (3)0.50.0370 (13)
H130.50.19840.50.044*
N10.5696 (2)0.40577 (17)0.6995 (4)0.0152 (5)
Cl110.72957 (8)0.61422 (6)1.23998 (14)0.0303 (2)
Pd010.65034 (3)0.50.96630 (6)0.01736 (12)
N220.5000.0288 (14)
O220.50.1536 (5)00.052 (2)0.5
C210.4476 (8)0.0853 (5)−0.1298 (13)0.0356 (18)0.5
C220.4325 (11)0−0.2451 (19)0.053 (4)0.5
U11U22U33U12U13U23
C110.013 (2)0.015 (2)0.018 (2)00.0063 (17)0
C120.0231 (18)0.0158 (15)0.035 (2)0.0002 (13)−0.0007 (15)0.0069 (13)
C130.034 (3)0.012 (2)0.051 (3)0−0.008 (3)0
N10.0112 (12)0.0180 (12)0.0155 (13)0.0008 (10)0.0027 (10)0.0040 (10)
Cl110.0220 (4)0.0488 (5)0.0189 (4)−0.0109 (4)0.0045 (3)−0.0137 (4)
Pd010.01263 (19)0.0256 (2)0.01300 (18)00.00278 (13)0
N220.052 (4)0.016 (3)0.026 (3)00.025 (3)0
O220.095 (7)0.019 (4)0.064 (6)00.058 (6)0
C210.037 (5)0.038 (4)0.041 (4)−0.001 (3)0.025 (4)0.002 (4)
C220.015 (5)0.123 (12)0.018 (5)00.003 (4)0
C11—N1i1.335 (3)N22—C221.408 (11)
C11—N11.335 (3)N22—C22iv1.408 (11)
C11—C11ii1.462 (8)N22—C21v1.454 (8)
C12—N11.336 (4)N22—C21vi1.454 (8)
C12—C131.368 (4)N22—C211.454 (8)
C12—H120.93N22—C21iv1.454 (8)
C13—C12i1.368 (4)O22—C211.258 (9)
C13—H130.93O22—C21v1.258 (9)
N1—Pd012.050 (2)C21—C221.379 (9)
Cl11—Pd012.2682 (8)C21—C21v1.598 (16)
Pd01—N1iii2.050 (2)C22—C21vi1.379 (9)
Pd01—Cl11iii2.2682 (8)
N1i—C11—N1125.5 (4)C22iv—N22—C21vi122.4 (3)
N1i—C11—C11ii117.24 (18)C21v—N22—C21vi180.0 (3)
N1—C11—C11ii117.24 (18)C22—N22—C2157.6 (3)
N1—C12—C13120.4 (3)C22iv—N22—C21122.4 (3)
N1—C12—H12119.8C21v—N22—C2166.7 (6)
C13—C12—H12119.8C21vi—N22—C21113.3 (6)
C12—C13—C12i119.6 (4)C22—N22—C21iv122.4 (3)
C12—C13—H13120.2C22iv—N22—C21iv57.6 (3)
C12i—C13—H13120.2C21v—N22—C21iv113.3 (6)
C11—N1—C12117.1 (3)C21vi—N22—C21iv66.7 (6)
C11—N1—Pd01111.7 (2)C21—N22—C21iv180.0 (6)
C12—N1—Pd01131.1 (2)C21—O22—C21v78.9 (8)
N1—Pd01—N1iii81.77 (13)O22—C21—C22160.9 (9)
N1—Pd01—Cl11174.98 (7)O22—C21—N22107.2 (6)
N1iii—Pd01—Cl1193.29 (7)C22—C21—N2259.5 (5)
N1—Pd01—Cl11iii93.29 (7)O22—C21—C21v50.6 (4)
N1iii—Pd01—Cl11iii174.98 (7)C22—C21—C21v114.6 (6)
Cl11—Pd01—Cl11iii91.63 (5)N22—C21—C21v56.7 (3)
C22—N22—C22iv180.0000 (10)C21—C22—C21vi123.5 (10)
C22—N22—C21v122.4 (3)C21—C22—N2262.9 (5)
C22iv—N22—C21v57.6 (3)C21vi—C22—N2262.9 (5)
C22—N22—C21vi57.6 (3)
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