| Literature DB >> 23284337 |
Abstract
In the title compound, [PdCl(2)(C(6)H(6)N(2)O(2))(2)], the Pd(II) atom is coordinated in a distorted square-planar geometry by two N atoms from two 4-nitro-aniline ligands and two Cl atoms in a trans arrangement. Inter-molecular N-H⋯Cl hydrogen bonds involving the amino groups and chloride anions lead to a chain along [100]. These chains are further self-assembled into a three-dimensional network through N-H⋯O and N-H⋯Cl hydrogen bonds.Entities:
Year: 2012 PMID: 23284337 PMCID: PMC3515110 DOI: 10.1107/S1600536812042134
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [PdCl2(C6H6N2O2)2] | |
| Monoclinic, | Mo |
| Hall symbol: C -2yc | Cell parameters from 5300 reflections |
| θ = 1.3–28.0° | |
| µ = 1.51 mm−1 | |
| β = 99.828 (2)° | Block, yellow |
| 0.33 × 0.30 × 0.26 mm | |
| Bruker APEXII CCD diffractometer | 2135 independent reflections |
| Radiation source: fine-focus sealed tube | 2075 reflections with |
| Graphite monochromator | |
| φ and ω scans | θmax = 25.2°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 4453 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max = 0.002 | |
| 2135 reflections | Δρmax = 0.50 e Å−3 |
| 208 parameters | Δρmin = −0.37 e Å−3 |
| 2 restraints | Absolute structure: Flack (1983), 696 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.46 (4) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| C1 | 0.7813 (8) | 0.46008 (19) | 0.2257 (5) | 0.0324 (10) | |
| C2 | 0.6105 (10) | 0.4507 (2) | 0.2984 (6) | 0.0405 (13) | |
| H2 | 0.4896 | 0.4745 | 0.3037 | 0.049* | |
| C3 | 0.6200 (9) | 0.4053 (2) | 0.3641 (5) | 0.0406 (12) | |
| H3 | 0.5098 | 0.3985 | 0.4161 | 0.049* | |
| C4 | 0.7981 (9) | 0.37081 (19) | 0.3496 (5) | 0.0358 (11) | |
| C5 | 0.9644 (10) | 0.3795 (2) | 0.2764 (5) | 0.0403 (12) | |
| H5 | 1.0798 | 0.3547 | 0.2692 | 0.048* | |
| C6 | 0.9651 (10) | 0.4245 (2) | 0.2123 (5) | 0.0380 (12) | |
| H6 | 1.0801 | 0.4311 | 0.1629 | 0.046* | |
| C7 | 1.1775 (9) | 0.66743 (19) | 0.2754 (5) | 0.0313 (10) | |
| C8 | 0.9834 (10) | 0.6949 (2) | 0.3044 (5) | 0.0371 (11) | |
| H8 | 0.8961 | 0.6828 | 0.3628 | 0.045* | |
| C9 | 0.9216 (10) | 0.7412 (2) | 0.2439 (5) | 0.0380 (12) | |
| H9 | 0.7917 | 0.7605 | 0.2606 | 0.046* | |
| C10 | 1.0586 (8) | 0.75750 (18) | 0.1588 (4) | 0.0307 (10) | |
| C11 | 1.2582 (9) | 0.73067 (19) | 0.1320 (5) | 0.0358 (11) | |
| H11 | 1.3503 | 0.7432 | 0.0762 | 0.043* | |
| C12 | 1.3145 (9) | 0.6845 (2) | 0.1918 (5) | 0.0366 (11) | |
| H12 | 1.4445 | 0.6653 | 0.1753 | 0.044* | |
| Cl1 | 1.2293 (4) | 0.55635 (8) | 0.0903 (2) | 0.0436 (6) | |
| Cl2 | 0.7793 (4) | 0.56838 (7) | 0.4000 (2) | 0.0408 (5) | |
| N1 | 0.7776 (8) | 0.50756 (15) | 0.1568 (4) | 0.0356 (9) | |
| H1A | 0.6253 | 0.5198 | 0.1427 | 0.043* | |
| H1B | 0.8208 | 0.5010 | 0.0837 | 0.043* | |
| N2 | 1.2299 (8) | 0.61827 (16) | 0.3332 (4) | 0.0365 (9) | |
| H2A | 1.2109 | 0.6202 | 0.4122 | 0.044* | |
| H2B | 1.3851 | 0.6099 | 0.3316 | 0.044* | |
| N3 | 0.8016 (11) | 0.3224 (2) | 0.4165 (6) | 0.0463 (15) | |
| N4 | 0.9877 (9) | 0.80407 (15) | 0.0883 (5) | 0.0404 (10) | |
| O1 | 0.6631 (11) | 0.3158 (2) | 0.4860 (6) | 0.0769 (16) | |
| O2 | 0.9473 (9) | 0.28974 (16) | 0.3938 (5) | 0.0609 (12) | |
| O3 | 0.7966 (11) | 0.8248 (2) | 0.1012 (5) | 0.0674 (18) | |
| O4 | 1.1159 (9) | 0.82003 (16) | 0.0195 (5) | 0.0601 (12) | |
| Pd1 | 1.00552 (7) | 0.562350 (12) | 0.24606 (5) | 0.02914 (13) |
| C1 | 0.027 (2) | 0.035 (3) | 0.035 (3) | −0.0012 (19) | 0.005 (2) | 0.000 (2) |
| C2 | 0.029 (3) | 0.037 (3) | 0.056 (4) | 0.001 (2) | 0.010 (3) | −0.008 (3) |
| C3 | 0.034 (3) | 0.045 (3) | 0.047 (3) | −0.006 (2) | 0.020 (2) | −0.003 (3) |
| C4 | 0.038 (3) | 0.032 (3) | 0.036 (3) | −0.006 (2) | 0.004 (2) | −0.002 (2) |
| C5 | 0.039 (3) | 0.041 (3) | 0.042 (3) | 0.006 (2) | 0.010 (2) | −0.003 (2) |
| C6 | 0.038 (3) | 0.044 (3) | 0.033 (3) | −0.003 (2) | 0.011 (2) | 0.002 (2) |
| C7 | 0.029 (2) | 0.029 (2) | 0.036 (2) | −0.0016 (19) | 0.005 (2) | −0.005 (2) |
| C8 | 0.040 (3) | 0.039 (3) | 0.036 (3) | −0.005 (2) | 0.016 (2) | 0.004 (2) |
| C9 | 0.035 (2) | 0.033 (3) | 0.046 (3) | 0.0080 (19) | 0.007 (3) | −0.005 (2) |
| C10 | 0.028 (2) | 0.031 (2) | 0.033 (3) | −0.0011 (18) | 0.006 (2) | 0.000 (2) |
| C11 | 0.033 (2) | 0.038 (3) | 0.039 (3) | 0.000 (2) | 0.013 (2) | −0.001 (2) |
| C12 | 0.029 (2) | 0.040 (3) | 0.041 (3) | 0.004 (2) | 0.007 (2) | −0.002 (2) |
| Cl1 | 0.0384 (10) | 0.0581 (11) | 0.0374 (11) | 0.0009 (7) | 0.0154 (8) | 0.0016 (7) |
| Cl2 | 0.0420 (10) | 0.0447 (9) | 0.0380 (11) | 0.0022 (6) | 0.0133 (8) | −0.0019 (7) |
| N1 | 0.033 (2) | 0.035 (2) | 0.038 (2) | −0.0002 (17) | 0.0059 (18) | −0.0011 (18) |
| N2 | 0.036 (2) | 0.036 (2) | 0.036 (2) | 0.0006 (17) | 0.0009 (18) | 0.0037 (18) |
| N3 | 0.059 (3) | 0.043 (3) | 0.037 (3) | −0.003 (3) | 0.008 (3) | 0.004 (2) |
| N4 | 0.045 (2) | 0.031 (2) | 0.045 (3) | 0.0020 (19) | 0.007 (2) | 0.001 (2) |
| O1 | 0.084 (4) | 0.069 (3) | 0.087 (4) | −0.002 (3) | 0.040 (3) | 0.028 (3) |
| O2 | 0.076 (3) | 0.044 (2) | 0.056 (3) | 0.008 (2) | −0.005 (2) | 0.006 (2) |
| O3 | 0.086 (4) | 0.068 (4) | 0.057 (3) | 0.042 (3) | 0.036 (3) | 0.024 (3) |
| O4 | 0.064 (3) | 0.053 (3) | 0.071 (3) | 0.004 (2) | 0.031 (2) | 0.023 (2) |
| Pd1 | 0.02850 (17) | 0.02877 (19) | 0.03039 (19) | 0.00214 (16) | 0.00572 (12) | 0.00207 (17) |
| C1—C2 | 1.374 (8) | C9—H9 | 0.9300 |
| C1—C6 | 1.416 (8) | C10—C11 | 1.395 (7) |
| C1—N1 | 1.459 (7) | C10—N4 | 1.468 (6) |
| C2—C3 | 1.394 (9) | C11—C12 | 1.390 (7) |
| C2—H2 | 0.9300 | C11—H11 | 0.9300 |
| C3—C4 | 1.376 (8) | C12—H12 | 0.9300 |
| C3—H3 | 0.9300 | Cl1—Pd1 | 2.305 (2) |
| C4—C5 | 1.354 (8) | Cl2—Pd1 | 2.297 (2) |
| C4—N3 | 1.470 (8) | N1—Pd1 | 2.060 (4) |
| C5—C6 | 1.379 (8) | N1—H1A | 0.9000 |
| C5—H5 | 0.9300 | N1—H1B | 0.9000 |
| C6—H6 | 0.9300 | N2—Pd1 | 2.062 (4) |
| C7—C12 | 1.375 (8) | N2—H2A | 0.9000 |
| C7—C8 | 1.387 (7) | N2—H2B | 0.9000 |
| C7—N2 | 1.448 (7) | N3—O1 | 1.196 (9) |
| C8—C9 | 1.403 (8) | N3—O2 | 1.238 (8) |
| C8—H8 | 0.9300 | N4—O4 | 1.207 (7) |
| C9—C10 | 1.381 (8) | N4—O3 | 1.231 (7) |
| C2—C1—C6 | 122.3 (5) | C12—C11—C10 | 117.6 (5) |
| C2—C1—N1 | 120.6 (5) | C12—C11—H11 | 121.2 |
| C6—C1—N1 | 117.0 (5) | C10—C11—H11 | 121.2 |
| C1—C2—C3 | 119.4 (5) | C7—C12—C11 | 119.9 (5) |
| C1—C2—H2 | 120.3 | C7—C12—H12 | 120.1 |
| C3—C2—H2 | 120.3 | C11—C12—H12 | 120.1 |
| C4—C3—C2 | 117.7 (5) | C1—N1—Pd1 | 113.1 (3) |
| C4—C3—H3 | 121.1 | C1—N1—H1A | 109.0 |
| C2—C3—H3 | 121.1 | Pd1—N1—H1A | 109.0 |
| C5—C4—C3 | 123.1 (5) | C1—N1—H1B | 109.0 |
| C5—C4—N3 | 119.7 (5) | Pd1—N1—H1B | 109.0 |
| C3—C4—N3 | 117.2 (5) | H1A—N1—H1B | 107.8 |
| C4—C5—C6 | 120.9 (5) | C7—N2—Pd1 | 111.5 (3) |
| C4—C5—H5 | 119.5 | C7—N2—H2A | 109.3 |
| C6—C5—H5 | 119.5 | Pd1—N2—H2A | 109.3 |
| C5—C6—C1 | 116.5 (5) | C7—N2—H2B | 109.3 |
| C5—C6—H6 | 121.8 | Pd1—N2—H2B | 109.3 |
| C1—C6—H6 | 121.8 | H2A—N2—H2B | 108.0 |
| C12—C7—C8 | 122.4 (5) | O1—N3—O2 | 123.6 (6) |
| C12—C7—N2 | 119.7 (5) | O1—N3—C4 | 119.7 (6) |
| C8—C7—N2 | 117.9 (5) | O2—N3—C4 | 116.6 (6) |
| C7—C8—C9 | 118.6 (5) | O4—N4—O3 | 122.9 (5) |
| C7—C8—H8 | 120.7 | O4—N4—C10 | 119.2 (5) |
| C9—C8—H8 | 120.7 | O3—N4—C10 | 117.9 (5) |
| C10—C9—C8 | 118.3 (5) | N1—Pd1—N2 | 178.86 (17) |
| C10—C9—H9 | 120.8 | N1—Pd1—Cl2 | 91.68 (14) |
| C8—C9—H9 | 120.8 | N2—Pd1—Cl2 | 88.43 (15) |
| C9—C10—C11 | 123.2 (5) | N1—Pd1—Cl1 | 87.97 (15) |
| C9—C10—N4 | 119.3 (4) | N2—Pd1—Cl1 | 91.91 (15) |
| C11—C10—N4 | 117.5 (4) | Cl2—Pd1—Cl1 | 179.48 (11) |
| H··· | ||||
| N1—H1 | 0.90 | 2.40 | 3.293 (5) | 175 |
| N1—H1 | 0.90 | 2.71 | 3.474 (5) | 143 |
| N2—H2 | 0.90 | 2.52 | 3.287 (7) | 143 |
| N2—H2 | 0.90 | 2.46 | 3.310 (5) | 157 |
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| N1—H1 | 0.90 | 2.40 | 3.293 (5) | 175 |
| N1—H1 | 0.90 | 2.71 | 3.474 (5) | 143 |
| N2—H2 | 0.90 | 2.52 | 3.287 (7) | 143 |
| N2—H2 | 0.90 | 2.46 | 3.310 (5) | 157 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .