Literature DB >> 23284319

N,N'-bis-[(3-hy-droxy-4(4H)-oxypyran-2-yl)meth-yl]-N,N'-dimethyl-ethylene-1,2-diammonium tetra-chloridoplatinate(II) dihydrate.

Vieri Fusi1, Luca Giorgi, Eleonora Macedi, Paola Paoli, Patrizia Rossi.   

Abstract

The title compound (C(16)H(22)N(2)O(6))[PtCl(4)]·2H(2)O, shows anti-proliferative activity in eight tumor cell lines. The asymmetric unit consists of one solvent water mol-ecule on a general position, and one half of each of the polyammonium cation and the tetrachloridoplatinate(II) anion, both of them located on centers of inversion. In the crystal, the cations are connected via hydrogen bonding between the carbonyl O atoms and the hydroxyl H atoms into zigzag chains that elongate in the c-axis direction. In addition, the carbonyl O atom is hydrogen-bonded to the water mol-ecule which, in turn, inter-acts with the [PtCl(4)](2-) anion. Finally, the chains are linked by N-H(+)⋯Cl inter-actions into a three-dimensional network.

Entities:  

Year:  2012        PMID: 23284319      PMCID: PMC3515092          DOI: 10.1107/S1600536812040949

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­tumor activity of maltol (systematic name: 3-hy­droxy-2-methyl-4-pyrone) and polyamines, see: Casero & Woster (2001 ▶); Liang et al. (2006 ▶); Murakami et al. (2006 ▶). For background to the synthesis, solution behaviour, structural properties and biological activity of N,N′-bis­[(3-hy­droxy-4-pyron-2-yl)meth­yl]-N,N′-dimethyl­ethylendiamine (Malten), see: Amatori et al. (2010 ▶, 2012 ▶).

Experimental

Crystal data

(C16H22N2O6)[PtCl4]·2H2O M = 711.28 Triclinic, a = 6.4775 (4) Å b = 7.0037 (4) Å c = 13.1628 (8) Å α = 88.810 (5)° β = 87.033 (5)° γ = 71.927 (6)° V = 566.92 (6) Å3 Z = 1 Mo Kα radiation μ = 6.71 mm−1 T = 150 K 0.32 × 0.22 × 0.20 mm

Data collection

Oxford Diffraction Xcalibur3 diffractometer Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction 2009 ▶) T min = 0.164, T max = 0.262 9431 measured reflections 2719 independent reflections 2694 reflections with I > 2σ(I) R int = 0.044

Refinement

R[F 2 > 2σ(F 2)] = 0.023 wR(F 2) = 0.049 S = 1.02 2719 reflections 158 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.44 e Å−3 Δρmin = −1.14 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: PARST97 (Nardelli, 1995 ▶). Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536812040949/nc2294sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536812040949/nc2294Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C16H22N2O6)[PtCl4]·2H2OZ = 1
Mr = 711.28F(000) = 346
Triclinic, P1Dx = 2.083 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.4775 (4) ÅCell parameters from 7279 reflections
b = 7.0037 (4) Åθ = 4.1–29.2°
c = 13.1628 (8) ŵ = 6.71 mm1
α = 88.810 (5)°T = 150 K
β = 87.033 (5)°Prismatic, light yellow
γ = 71.927 (6)°0.32 × 0.22 × 0.20 mm
V = 566.92 (6) Å3
Oxford Diffraction Xcalibur3 diffractometer2719 independent reflections
Radiation source: Enhance (Mo) X-ray Source2694 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.044
Detector resolution: 16.4547 pixels mm-1θmax = 29.3°, θmin = 4.1°
ω scansh = −8→8
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction 2009)k = −9→9
Tmin = 0.164, Tmax = 0.262l = −17→17
9431 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.023Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.049H atoms treated by a mixture of independent and constrained refinement
S = 1.02w = 1/[σ2(Fo2) + (0.0253P)2] where P = (Fo2 + 2Fc2)/3
2719 reflections(Δ/σ)max < 0.001
158 parametersΔρmax = 1.44 e Å3
0 restraintsΔρmin = −1.14 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pt11.00000.00000.50000.01531 (6)
Cl11.25762 (12)0.12554 (11)0.42237 (6)0.01926 (15)
Cl20.82520 (13)0.02992 (11)0.34889 (6)0.02098 (16)
O10.8029 (5)0.6477 (4)0.1284 (2)0.0298 (6)
O20.8598 (4)0.3386 (4)−0.00821 (17)0.0278 (5)
O30.3953 (4)0.4312 (3)0.22157 (16)0.0218 (5)
N10.5757 (4)0.6487 (4)0.3876 (2)0.0169 (5)
C10.4294 (6)0.2757 (5)0.1565 (3)0.0261 (7)
H10.34240.19240.16490.031*
C20.5823 (6)0.2365 (5)0.0809 (3)0.0263 (7)
H20.59980.12630.03940.032*
C30.7197 (5)0.3601 (5)0.0625 (2)0.0224 (7)
C40.6815 (5)0.5228 (5)0.1358 (2)0.0205 (6)
C50.5256 (5)0.5510 (5)0.2108 (2)0.0187 (6)
C60.4731 (5)0.7161 (5)0.2869 (2)0.0190 (6)
H6A0.31660.76820.29840.023*
H6B0.52330.82440.25950.023*
C70.4568 (5)0.5266 (5)0.4470 (2)0.0181 (6)
H7A0.47190.40390.41030.022*
H7B0.30330.60180.45320.022*
C150.8152 (5)0.5442 (5)0.3735 (2)0.0181 (6)
H15A0.88210.62900.33510.027*
H15B0.83890.42070.33760.027*
H15C0.87780.51590.43880.027*
O1W1.1440 (5)−0.0251 (4)0.1423 (2)0.0343 (6)
H1N0.559 (6)0.742 (6)0.417 (3)0.028 (11)*
H1O0.888 (7)0.623 (6)0.088 (3)0.024 (11)*
H1WA1.062 (9)−0.020 (8)0.194 (4)0.059 (16)*
H1WB1.128 (7)−0.105 (7)0.104 (3)0.040 (13)*
U11U22U33U12U13U23
Pt10.01339 (9)0.01279 (9)0.02021 (9)−0.00476 (6)0.00072 (6)−0.00306 (6)
Cl10.0169 (4)0.0185 (4)0.0241 (4)−0.0084 (3)0.0032 (3)−0.0031 (3)
Cl20.0223 (4)0.0208 (4)0.0219 (4)−0.0092 (3)−0.0040 (3)−0.0009 (3)
O10.0347 (15)0.0327 (14)0.0275 (13)−0.0200 (12)0.0137 (12)−0.0108 (11)
O20.0310 (14)0.0309 (13)0.0237 (12)−0.0136 (11)0.0074 (10)−0.0087 (10)
O30.0236 (12)0.0246 (12)0.0197 (11)−0.0112 (10)−0.0005 (9)−0.0021 (9)
N10.0197 (14)0.0154 (13)0.0168 (12)−0.0074 (11)0.0002 (10)−0.0020 (10)
C10.0284 (19)0.0261 (18)0.0283 (17)−0.0143 (15)−0.0056 (15)0.0001 (14)
C20.0310 (19)0.0242 (17)0.0271 (17)−0.0134 (15)0.0003 (15)−0.0062 (13)
C30.0251 (18)0.0222 (16)0.0196 (15)−0.0064 (13)−0.0035 (13)−0.0020 (12)
C40.0236 (17)0.0208 (16)0.0191 (15)−0.0096 (13)−0.0003 (13)−0.0030 (12)
C50.0218 (16)0.0177 (15)0.0172 (14)−0.0065 (13)−0.0041 (13)0.0014 (11)
C60.0220 (16)0.0170 (15)0.0170 (14)−0.0047 (12)−0.0027 (12)0.0018 (11)
C70.0171 (15)0.0176 (15)0.0200 (15)−0.0060 (12)0.0006 (12)0.0009 (11)
C150.0158 (15)0.0189 (15)0.0194 (14)−0.0051 (12)0.0007 (12)−0.0008 (11)
O1W0.0380 (17)0.0383 (16)0.0315 (15)−0.0187 (13)−0.0001 (13)−0.0064 (12)
Pt1—Cl1i2.3018 (8)C2—C31.431 (5)
Pt1—Cl12.3018 (8)C2—H20.9300
Pt1—Cl2i2.3132 (7)C3—C41.462 (4)
Pt1—Cl22.3132 (7)C4—C51.348 (5)
O1—C41.345 (4)C5—C61.491 (4)
O1—H1O0.73 (4)C6—H6A0.9700
O2—C31.243 (4)C6—H6B0.9700
O3—C11.356 (4)C7—C7ii1.526 (6)
O3—C51.363 (4)C7—H7A0.9700
N1—C151.499 (4)C7—H7B0.9700
N1—C71.501 (4)C15—H15A0.9600
N1—C61.514 (4)C15—H15B0.9600
N1—H1N0.74 (4)C15—H15C0.9600
C1—C21.337 (5)O1W—H1WA0.84 (5)
C1—H10.9300O1W—H1WB0.79 (5)
Cl1i—Pt1—Cl1180.00 (4)O1—C4—C3119.7 (3)
Cl1i—Pt1—Cl2i90.28 (3)C5—C4—C3121.2 (3)
Cl1—Pt1—Cl2i89.72 (3)C4—C5—O3121.9 (3)
Cl1i—Pt1—Cl289.72 (3)C4—C5—C6124.4 (3)
Cl1—Pt1—Cl290.28 (3)O3—C5—C6113.7 (3)
Cl2i—Pt1—Cl2180.0C5—C6—N1112.9 (2)
C4—O1—H1O115 (3)C5—C6—H6A109.0
C1—O3—C5118.6 (3)N1—C6—H6A109.0
C15—N1—C7113.3 (2)C5—C6—H6B109.0
C15—N1—C6111.5 (2)N1—C6—H6B109.0
C7—N1—C6110.8 (2)H6A—C6—H6B107.8
C15—N1—H1N109 (3)N1—C7—C7ii111.9 (3)
C7—N1—H1N107 (3)N1—C7—H7A109.2
C6—N1—H1N106 (3)C7ii—C7—H7A109.2
C2—C1—O3123.1 (3)N1—C7—H7B109.2
C2—C1—H1118.5C7ii—C7—H7B109.2
O3—C1—H1118.5H7A—C7—H7B107.9
C1—C2—C3121.5 (3)N1—C15—H15A109.5
C1—C2—H2119.2N1—C15—H15B109.5
C3—C2—H2119.2H15A—C15—H15B109.5
O2—C3—C2125.6 (3)N1—C15—H15C109.5
O2—C3—C4120.7 (3)H15A—C15—H15C109.5
C2—C3—C4113.7 (3)H15B—C15—H15C109.5
O1—C4—C5119.1 (3)H1WA—O1W—H1WB109 (5)
D—H···AD—HH···AD···AD—H···A
O1—H1O···O2iii0.73 (4)1.98 (4)2.655 (4)154 (4)
O1W—H1WB···O2iv0.79 (5)2.07 (5)2.853 (4)171 (4)
O1W—H1WA···Cl20.84 (5)2.45 (5)3.282 (3)174 (5)
N1—H1N···Cl1v0.74 (4)2.79 (4)3.380 (3)139 (4)
N1—H1N···Cl1vi0.74 (4)2.79 (4)3.362 (3)136 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1O⋯O2i 0.73 (4)1.98 (4)2.655 (4)154 (4)
O1W—H1WB⋯O2ii 0.79 (5)2.07 (5)2.853 (4)171 (5)
O1W—H1WA⋯Cl20.84 (5)2.45 (5)3.282 (3)174 (5)
N1—H1N⋯Cl1iii 0.74 (4)2.79 (4)3.380 (3)139 (4)
N1—H1N⋯Cl1iv 0.74 (4)2.79 (4)3.362 (3)136 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  6 in total

Review 1.  Terminally alkylated polyamine analogues as chemotherapeutic agents.

Authors:  R A Casero; P M Woster
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2.  Synthesis, basicity, structural characterization, and biochemical properties of two [(3-hydroxy-4-pyron-2-yl)methyl]amine derivatives showing antineoplastic features.

Authors:  Stefano Amatori; Gianluca Ambrosi; Mirco Fanelli; Mauro Formica; Vieri Fusi; Luca Giorgi; Eleonora Macedi; Mauro Micheloni; Paola Paoli; Roberto Pontellini; Patrizia Rossi
Journal:  J Org Chem       Date:  2012-02-22       Impact factor: 4.354

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Maltol/iron-mediated apoptosis in HL60 cells: participation of reactive oxygen species.

Authors:  Keiko Murakami; Kumiko Ishida; Kyoko Watakabe; Ryoko Tsubouchi; Makoto Naruse; Masataka Yoshino
Journal:  Toxicol Lett       Date:  2005-09-06       Impact factor: 4.372

Review 5.  Medical applications of macrocyclic polyamines.

Authors:  Feng Liang; Shuhui Wan; Zheng Li; Xiaoqin Xiong; Li Yang; Xiang Zhou; Chengtai Wu
Journal:  Curr Med Chem       Date:  2006       Impact factor: 4.530

6.  Malten, a new synthetic molecule showing in vitro antiproliferative activity against tumour cells and induction of complex DNA structural alterations.

Authors:  S Amatori; I Bagaloni; E Macedi; M Formica; L Giorgi; V Fusi; M Fanelli
Journal:  Br J Cancer       Date:  2010-06-22       Impact factor: 7.640

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1.  (1RS,2RS)-4,4'-(1-Aza-niumyl-2-hy-droxy-ethane-1,2-di-yl)dipyridinium tetra-chlorido-platinate(II) chloride.

Authors:  José J Campos-Gaxiola; Jorge L Almaral-Sanchez; Adriana Cruz-Enríquez; Herbert Höpfl; Miguel Parra-Hake
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-02-20
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