Literature DB >> 2328280

Side-chain interactions in the C-peptide helix: Phe 8 ... His 12+.

K R Shoemaker1, R Fairman, D A Schultz, A D Robertson, E J York, J M Stewart, R L Baldwin.   

Abstract

Previous studies have demonstrated that His 12 plays a major role in the pH-dependent stability of the helix formed by the isolated C-peptide (residues 1-13 of ribonuclease A). Here, amino acid replacement experiments show that His 12+ stabilizes the C-peptide helix chiefly by interacting with Phe 8. The Phe 8 ... His 12+ ring interaction is specific for the protonated form of His 12 (His 12+) and the interaction is not screened significantly by NaCl, unlike the charged group ... helix dipole interactions studied earlier in C-peptide. Analogs of C-peptide that are unable to form the Phe 8 ... His 12+ interaction show large increases in helix content for Phe----Ala and His----Ala. Therefore, the helical tendencies of the individual residues Phe, His, and Ala are important in determining the result of a replacement experiment. Since the side chains of Phe 8 and His 12 probably interact within the N-terminal helix of ribonuclease A, the existence of the Phe 8 ... His 12+ interaction in the isolated C-peptide helix adds to the evidence that the C-peptide helix is an autonomous folding unit.

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Year:  1990        PMID: 2328280     DOI: 10.1002/bip.360290104

Source DB:  PubMed          Journal:  Biopolymers        ISSN: 0006-3525            Impact factor:   2.505


  18 in total

1.  Alpha-helix stabilization by natural and unnatural amino acids with alkyl side chains.

Authors:  P C Lyu; J C Sherman; A Chen; N R Kallenbach
Journal:  Proc Natl Acad Sci U S A       Date:  1991-06-15       Impact factor: 11.205

2.  Molecular mechanism for stabilizing a short helical peptide studied by generalized-ensemble simulations with explicit solvent.

Authors:  Yuji Sugita; Yuko Okamoto
Journal:  Biophys J       Date:  2005-03-04       Impact factor: 4.033

3.  Exploring atomistic details of pH-dependent peptide folding.

Authors:  Jana Khandogin; Jianhan Chen; Charles L Brooks
Journal:  Proc Natl Acad Sci U S A       Date:  2006-11-20       Impact factor: 11.205

4.  Mapping backbone and side-chain interactions in the transition state of a coupled protein folding and binding reaction.

Authors:  Annett Bachmann; Dirk Wildemann; Florian Praetorius; Gunter Fischer; Thomas Kiefhaber
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-16       Impact factor: 11.205

5.  Membrane anchoring and interaction between transmembrane domains are crucial for K+ channel function.

Authors:  Manuela Gebhardt; Franziska Hoffgaard; Kay Hamacher; Stefan M Kast; Anna Moroni; Gerhard Thiel
Journal:  J Biol Chem       Date:  2011-02-10       Impact factor: 5.157

6.  Robustness of a rhythmic circuit to short- and long-term temperature changes.

Authors:  Lamont S Tang; Adam L Taylor; Anatoly Rinberg; Eve Marder
Journal:  J Neurosci       Date:  2012-07-18       Impact factor: 6.167

7.  Development of SAAP3D force field and the application to replica-exchange Monte Carlo simulation for chignolin and C-peptide.

Authors:  Michio Iwaoka; Toshiki Suzuki; Yuya Shoji; Kenichi Dedachi; Taku Shimosato; Toshiya Minezaki; Hironobu Hojo; Hiroyuki Onuki; Hiroshi Hirota
Journal:  J Comput Aided Mol Des       Date:  2017-11-17       Impact factor: 3.686

8.  Understanding microscopic binding of human microsomal prostaglandin E synthase-1 (mPGES-1) trimer with substrate PGH2 and cofactor GSH: insights from computational alanine scanning and site-directed mutagenesis.

Authors:  Adel Hamza; Min Tong; Mohamed Diwan M AbdulHameed; Junjun Liu; Alan C Goren; Hsin-Hsiung Tai; Chang-Guo Zhan
Journal:  J Phys Chem B       Date:  2010-04-29       Impact factor: 2.991

9.  Comparative Molecular Dynamics Analysis of RNase-S Complex Formation.

Authors:  Manuel P Luitz; Rainer Bomblies; Martin Zacharias
Journal:  Biophys J       Date:  2017-10-03       Impact factor: 4.033

10.  Conformational strictness required for maximum activity and stability of bovine pancreatic ribonuclease A as revealed by crystallographic study of three Phe120 mutants at 1.4 A resolution.

Authors:  Eri Chatani; Rikimaru Hayashi; Hideaki Moriyama; Tatzuo Ueki
Journal:  Protein Sci       Date:  2002-01       Impact factor: 6.725

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