| Literature DB >> 23282086 |
Márcia Gonçalves de Castro1, Fernanda Bruycker de Nogueira, Rita Maria Ribeiro Nogueira, Ricardo Lourenço-de-Oliveira, Flávia Barreto dos Santos.
Abstract
BACKGROUND: Dengue, a mosquito-borne viral infection caused by one of the four dengue virus (DENV) serotypes (DENV-1 to 4), replicate alternately on the mosquito vector and human host and are responsible for infections throughout tropical and subtropical regions of the world. In Brazil, the disease has become a major public health problem and the introduction of DENV-3 in 2000 in Rio de Janeiro (RJ) was associated with severe dengue epidemics. The potential emergence of strains associated with severe disease highlights the need for the surveillance of DENV in human host and vectors.Entities:
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Year: 2013 PMID: 23282086 PMCID: PMC3547765 DOI: 10.1186/1743-422X-10-3
Source DB: PubMed Journal: Virol J ISSN: 1743-422X Impact factor: 4.099
Brazilian DENV-3 isolated from naturally infected vectors and human cases analyzed in this study
| BR73354/01 | RJ | 2001 | Mosquitoes | FJ177308 | Complete genome | This study |
| BR73356/01 | RJ | 2001 | Mosquitoes | JN383345 | 3′UTR | This study |
| BR73636/01 | RJ | 2001 | Mosquitoes | JN383346 | 3′UTR | This study |
| BR81200/06 | RJ | 2006 | Mosquitoes | JN383344 | 3′UTR | This study |
| BR70562/01 | RJ | 2002 | Human serum | JN380902 | 3′UTR | This study |
| BR74792/02 | RJ | 2002 | Human serum | JN380899 | 3′UTR | This study |
| BR74916/02 | RJ | 2002 | Human serum | JN380901 | 3′UTR | This study |
| BR74947/02 | RJ | 2002 | Human serum | JN380904 | 3′UTR | This study |
| BR77515/03 | RJ | 2003 | Human serum | JN380900 | 3′UTR | This study |
| BR78969/04 | RJ | 2004 | Human serum | JN380905 | 3′UTR | This study |
| BR80740/05 | RJ | 2005 | Human serum | JN380906 | 3′UTR | This study |
| BR80996/06 | RJ | 2006 | Human serum | JN380903 | 3′UTR | This study |
| BR83904/07 | RJ | 2007 | Human serum | JN380898 | 3′UTR | This study |
| BR072/08 | RJ | 2008 | Human serum | JN380907 | 3′UTR | This study |
| BR74886/02 | RJ | 2002 | Human liver | AY679147 | Complete genome | Miagostovich et al., 2006 |
*RJ: Rio de Janeiro.
Figure 1Neighbor-joining phylogenetic analysis of the complete genome sequence from DENV-3 isolated from naturally infected mosquitoes in Brazil, 2001. Black circle represent DENV-3 sequence generated in this study. Strains representative from the four genotypes available in Genbank ( http://www.ncbi.nlm.nih.gov) were used for the comparison, DENV-1, DENV-2 and DENV-4 strains were used as outgroup to root the tree. The percentage of replicate trees in which the associated taxa clustered together in the bootstrap test (1000 replicates) is shown next to the branches. DENV strains used were named as follows: GenBank accession number/country/year
Amino acid differences among selected Brazilian DENV-3 and strains representative of the DENV-3 genotypes, compared to the prototype H87
| | | | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Capsid | C 108 | M | | | | ||||
| C112 | T | | | | |||||
| prMembrane | prM86 | H | | | | ||||
| Envelope | E81 | I | | | | ||||
| E124 | S | L | L | L | | ||||
| E132 | H | | | ||||||
| E169 | A | V | V | V | |||||
| E270 | T | | | ||||||
| E301 | L | S | | | |||||
| E380 | I | | | | | | |||
| E383 | K | | | | | ||||
| E452 | I | | | | |||||
| NS1 | NS184 | I | | | | | | | |
| NS194 | T | I | | I | I | I | I | I | |
| NS1139 | S | N | | N | N | N | N | N | |
| NS1339 | N | | | | |||||
| NS2A | NS2A37 | L | | | | ||||
| NS2A158 | I | | | | |||||
| NS2A175 | I | | | ||||||
| NS2A195 | T | | | | |||||
| NS2B | NS2B60 | V | | | | ||||
| NS2B109 | I | | | | |||||
| NS3 | NS3115 | I | | | | ||||
| NS3452 | V | | | ||||||
| NS4A | NS4A99 | D | | | | ||||
| NS4B | NS4B21 | V | | | | ||||
| NS4B138 | V | | | | |||||
| NS5 | NS597 | V | | | | | | | |
| NS598 | T | | | | | | | ||
| NS5101 | R | | | | | | | ||
| NS5105 | K | | | | | | | ||
| NS5112 | E | | | | | | | ||
| NS5114 | V | | | | | | | ||
| NS5117 | S | | | | | | | ||
| NS5127 | M | | | | | | | ||
| NS5131 | D | | | | | | | ||
| NS5133 | F | | | | | | | ||
| NS5135 | L | | | | | | | ||
| NS5229 | S | | | | |||||
| NS5233 | M | | | | | | | ||
| NS5288 | S | | | | |||||
| NS5365 | P | | | | |||||
| NS5371 | K | | | | |||||
| NS5374 | E | | | | |||||
| NS5389 | R | | | | |||||
| NS5422 | R | | | | |||||
| NS5429 | E | | | | |||||
| NS5585 | K | | | | |||||
| NS5639 | L | | | | |||||
| NS5763 | T | A | S | A | |||||
| NS5835 | D | ||||||||
Blank cells indicate amino acid similarities to the prototype strain H87 (GenBank accession number M93130). *STOP: stop codon.
Figure 2Multiple nucleotide sequence alignment of the Brazilian DENV-3 3′UTR from additional strains isolated from mosquitoes (4) and humans (10) from 2001 to 2008. Dots (.) indicate identity among strains based on the Brazilian strain BR74886/02, characterized by the 11 nucleotides insertion on the variable region (VR). Dashes (−) indicate gaps in the alignment. The 8 nucleotides deletion characteristic to strains isolated from mosquitoes BR73354mosq/2001, BR73356mosq/2001 and from a strain isolated in human (BR74792/2002) are marked by black squares. Eleven nucleotide insertion and conserved sequence regions (RCS2, CS2 and CS1) are gray-shadowed
Figure 3On (A) the predicted secondary structure of the variable region (VR) from Brazilian DENV-3 strains isolated from humans and mosquitoes (nucleotides 1 to 108) presenting the 11-nucleotides insertion and compared to the prototype PHIL/87/1956 (nucleotides 1–104). On (B) the predicted secondary structures from the Brazilian strains (nucleotides 1 to108) presenting the 11-nucleotides insertion, but with nucleotides substitutions differing from the strains on (A) and on (C) the structures from the sequences (nucleotides 1 to 100) with the 8-nucleotides deletion