Literature DB >> 23280663

MSpin-RDC. A program for the use of residual dipolar couplings for structure elucidation of small molecules.

Armando Navarro-Vázquez1.   

Abstract

We developed a new program, MSpin-RDC for the analysis of residual dipolar coupling data. This software, specially designed for small molecule analysis, can directly read many molecular-modeling and popular chemistry file formats and accept RDC values as a simple free-format table. Alignment tensor can then be computed by singular value decomposition, as well as predicted using inertia and gyration tensor-based methodologies. Trial structures are then ranked according to their Cornilescu's quality factor (Q) values. Analysis of multiconformational problems and fitting of RDC data to relative populations can be accomplished using the single-tensor approximation.
Copyright © 2012 John Wiley & Sons, Ltd.

Entities:  

Year:  2012        PMID: 23280663     DOI: 10.1002/mrc.3905

Source DB:  PubMed          Journal:  Magn Reson Chem        ISSN: 0749-1581            Impact factor:   2.447


  12 in total

1.  Progressive Stereo Locking (PSL): A Residual Dipolar Coupling Based Force Field Method for Determining the Relative Configuration of Natural Products and Other Small Molecules.

Authors:  Gabriel Cornilescu; René F Ramos Alvarenga; Thomas P Wyche; Tim S Bugni; Roberto R Gil; Claudia C Cornilescu; William M Westler; John L Markley; Charles D Schwieters
Journal:  ACS Chem Biol       Date:  2017-07-12       Impact factor: 5.100

2.  FANTEN: a new web-based interface for the analysis of magnetic anisotropy-induced NMR data.

Authors:  Mauro Rinaldelli; Azzurra Carlon; Enrico Ravera; Giacomo Parigi; Claudio Luchinat
Journal:  J Biomol NMR       Date:  2014-11-22       Impact factor: 2.835

3.  Programmable alignment media from self-assembled oligopeptide amphiphiles for the measurement of independent sets of residual dipolar couplings in organic solvents.

Authors:  Yuexiao Lin; Jiaqian Li; Si-Yong Qin; Han Sun; Yan-Ling Yang; Armando Navarro-Vázquez; Xinxiang Lei
Journal:  Chem Sci       Date:  2022-04-14       Impact factor: 9.969

Review 4.  Residual Dipolar Couplings in Structure Determination of Natural Products.

Authors:  Gao-Wei Li; Han Liu; Feng Qiu; Xiao-Juan Wang; Xin-Xiang Lei
Journal:  Nat Prod Bioprospect       Date:  2018-06-25

5.  Configuration determination by residual dipolar couplings: accessing the full conformational space by molecular dynamics with tensorial constraints.

Authors:  Pavleta Tzvetkova; Ulrich Sternberg; Thomas Gloge; Armando Navarro-Vázquez; Burkhard Luy
Journal:  Chem Sci       Date:  2019-07-29       Impact factor: 9.825

6.  Efficient Chemoenzymatic Synthesis of N-Glycans with a β1,4-Galactosylated Bisecting GlcNAc Motif.

Authors:  Michael Weiss; Dimitri Ott; Theodoros Karagiannis; Markus Weishaupt; Mathäus Niemietz; Steffen Eller; Marie Lott; Mónica Martínez-Orts; Ángeles Canales; Nahid Razi; James C Paulson; Carlo Unverzagt
Journal:  Chembiochem       Date:  2020-08-19       Impact factor: 3.164

7.  Advances in the REDCAT software package.

Authors:  Chris Schmidt; Stephanie J Irausquin; Homayoun Valafar
Journal:  BMC Bioinformatics       Date:  2013-10-07       Impact factor: 3.169

8.  The Use of a Combination of RDC and Chiroptical Spectroscopy for Determination of the Absolute Configuration of Fusariumin A from the Fungus Fusarium sp.

Authors:  Liang-Yan Liu; Han Sun; Christian Griesinger; Ji-Kai Liu
Journal:  Nat Prod Bioprospect       Date:  2016-01-20

9.  Relative configuration of micrograms of natural compounds using proton residual chemical shift anisotropy.

Authors:  Nilamoni Nath; Juan Carlos Fuentes-Monteverde; Dawrin Pech-Puch; Jaime Rodríguez; Carlos Jiménez; Markus Noll; Alexander Kreiter; Michael Reggelin; Armando Navarro-Vázquez; Christian Griesinger
Journal:  Nat Commun       Date:  2020-09-01       Impact factor: 14.919

10.  Determination of Configuration and Conformation of a Reserpine Derivative with Seven Stereogenic Centers Using Molecular Dynamics with RDC-Derived Tensorial Constraints*.

Authors:  Emine Sager; Pavleta Tzvetkova; Alvar D Gossert; Philippe Piechon; Burkhard Luy
Journal:  Chemistry       Date:  2020-10-01       Impact factor: 5.236

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