Literature DB >> 23278123

Populus trichocarpa cell wall chemistry and ultrastructure trait variation, genetic control and genetic correlations.

Ilga Porth1, Jaroslav Klápště2, Oleksandr Skyba1, Ben S K Lai1, Armando Geraldes3, Wellington Muchero4, Gerald A Tuskan4, Carl J Douglas3, Yousry A El-Kassaby2, Shawn D Mansfield1.   

Abstract

The increasing ecological and economical importance of Populus species and hybrids has stimulated research into the investigation of the natural variation of the species and the estimation of the extent of genetic control over its wood quality traits for traditional forestry activities as well as the emerging bioenergy sector. A realized kinship matrix based on informative, high-density, biallelic single nucleotide polymorphism (SNP) genetic markers was constructed to estimate trait variance components, heritabilities, and genetic and phenotypic correlations. Seventeen traits related to wood chemistry and ultrastructure were examined in 334 9-yr-old Populus trichocarpa grown in a common-garden plot representing populations spanning the latitudinal range 44° to 58.6°. In these individuals, 9342 SNPs that conformed to Hardy-Weinberg expectations were employed to assess the genomic pair-wise kinship to estimate narrow-sense heritabilities and genetic correlations among traits. The range-wide phenotypic variation in all traits was substantial and several trait heritabilities were > 0.6. In total, 61 significant genetic and phenotypic correlations and a network of highly interrelated traits were identified. The high trait variation, the evidence for moderate to high heritabilities and the identification of advantageous trait combinations of industrially important characteristics should aid in providing the foundation for the enhancement of poplar tree breeding strategies for modern industrial use.
© 2012 The Authors. New Phytologist © 2012 New Phytologist Trust.

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Year:  2012        PMID: 23278123     DOI: 10.1111/nph.12014

Source DB:  PubMed          Journal:  New Phytol        ISSN: 0028-646X            Impact factor:   10.151


  28 in total

1.  Extensive functional pleiotropy of REVOLUTA substantiated through forward genetics.

Authors:  Ilga Porth; Jaroslav Klápste; Athena D McKown; Jonathan La Mantia; Richard C Hamelin; Oleksandr Skyba; Faride Unda; Michael C Friedmann; Quentin C B Cronk; Jürgen Ehlting; Robert D Guy; Shawn D Mansfield; Yousry A El-Kassaby; Carl J Douglas
Journal:  Plant Physiol       Date:  2013-12-05       Impact factor: 8.340

2.  Bioenergy Development Policy and Practice Must Recognize Potential Hydrologic Impacts: Lessons from the Americas.

Authors:  David W Watkins; Márcia M G Alcoforado de Moraes; Heidi Asbjornsen; Alex S Mayer; Julian Licata; Jose Gutierrez Lopez; Thomas G Pypker; Vivianna Gamez Molina; Guilherme Fernandes Marques; Ana Cristina Guimaraes Carneiro; Hector M Nuñez; Hayri Önal; Bruna da Nobrega Germano
Journal:  Environ Manage       Date:  2015-03-27       Impact factor: 3.266

3.  Single nucleotide polymorphisms in a cellulose synthase gene (PtoCesA3) are associated with growth and wood properties in Populus tomentosa.

Authors:  Baohua Xu; Jiaxing Tian; Qingzhang Du; Chenrui Gong; Wei Pan; Deqiang Zhang
Journal:  Planta       Date:  2014-08-21       Impact factor: 4.116

4.  Sustainable bioenergy for climate mitigation: developing drought-tolerant trees and grasses.

Authors:  G Taylor; I S Donnison; D Murphy-Bokern; M Morgante; M-B Bogeat-Triboulot; R Bhalerao; M Hertzberg; A Polle; A Harfouche; F Alasia; V Petoussi; D Trebbi; K Schwarz; J J B Keurentjes; M Centritto; B Genty; J Flexas; E Grill; S Salvi; W J Davies
Journal:  Ann Bot       Date:  2019-10-29       Impact factor: 4.357

5.  Populus endo-β-1,4-glucanases gene family: genomic organization, phylogenetic analysis, expression profiles and association mapping.

Authors:  Qingzhang Du; Lu Wang; Xiaohui Yang; Chenrui Gong; Deqiang Zhang
Journal:  Planta       Date:  2015-02-26       Impact factor: 4.116

6.  Dissecting the phenotypic components of crop plant growth and drought responses based on high-throughput image analysis.

Authors:  Dijun Chen; Kerstin Neumann; Swetlana Friedel; Benjamin Kilian; Ming Chen; Thomas Altmann; Christian Klukas
Journal:  Plant Cell       Date:  2014-12-11       Impact factor: 11.277

7.  Single-nucleotide polymorphisms in PtoCesA7 and their association with growth and wood properties in Populus tomentosa.

Authors:  Jiaxing Tian; Mengqi Chang; Qingzhang Du; Baohua Xu; Deqiang Zhang
Journal:  Mol Genet Genomics       Date:  2014-02-19       Impact factor: 3.291

8.  Gene Expression Patterns of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium Are Influenced by Wood Substrate Composition during Degradation.

Authors:  Oleksandr Skyba; Dan Cullen; Carl J Douglas; Shawn D Mansfield
Journal:  Appl Environ Microbiol       Date:  2016-06-30       Impact factor: 4.792

9.  Indole-3-acetic acid has long-term effects on long non-coding RNA gene methylation and growth in Populus tomentosa.

Authors:  Dong Ci; Min Tian; Yuepeng Song; Qingzhang Du; Mingyang Quan; Anran Xuan; Jianyuan Yu; Zixuan Yuan; Deqiang Zhang
Journal:  Mol Genet Genomics       Date:  2019-07-19       Impact factor: 3.291

10.  Tubulin perturbation leads to unexpected cell wall modifications and affects stomatal behaviour in Populus.

Authors:  Prashant S Swamy; Hao Hu; Sivakumar Pattathil; Victoria J Maloney; Hui Xiao; Liang-Jiao Xue; Jeng-Der Chung; Virgil E Johnson; Yingying Zhu; Gary F Peter; Michael G Hahn; Shawn D Mansfield; Scott A Harding; Chung-Jui Tsai
Journal:  J Exp Bot       Date:  2015-08-05       Impact factor: 6.992

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