Literature DB >> 23273018

Copy number variant analysis in CHM to detect duplications underlying choroideremia.

Jonathan Y Chi1, Ian M MacDonald, Stacey Hume.   

Abstract

PURPOSE: To investigate the possibility of duplications or deletions within the CHM gene as a cause of choroideremia (CHM).
MATERIALS AND METHODS: Eight males and one female subject were identified in whom clinical features were consistent with a clinical diagnosis of CHM. In all cases, sequencing of the coding region and adjacent intronic splice sites did not identify a mutation. In some cases, supplemental immunoblot analysis of protein from peripheral blood leukocytes with anti-REP-1 antibody confirmed absence of Rab escort protein-1, REP-1. A multiplex ligation-dependent probe amplification assay (MLPA) for the CHM gene was developed to test for deletions and duplications within the CHM gene.
RESULTS: A duplication of exons 3-8 of the CHM gene (NM_000390.2) was identified in one case. DISCUSSION: While likely an uncommon event, duplication within the CHM gene could be considered as an explanation for CHM cases in which no mutation is found by sequence analysis.

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Year:  2012        PMID: 23273018     DOI: 10.3109/13816810.2012.752016

Source DB:  PubMed          Journal:  Ophthalmic Genet        ISSN: 1381-6810            Impact factor:   1.803


  5 in total

1.  Clinical utility gene card for: choroideremia.

Authors:  Mariya Moosajee; Simon C Ramsden; Graeme C M Black; Miguel C Seabra; Andrew R Webster
Journal:  Eur J Hum Genet       Date:  2013-08-21       Impact factor: 4.246

2.  A novel SVA retrotransposon insertion in the CHM gene results in loss of REP-1 causing choroideremia.

Authors:  Kaylie D Jones; Alina Radziwon; David G Birch; Ian M MacDonald
Journal:  Ophthalmic Genet       Date:  2020-05-22       Impact factor: 1.803

3.  Molecular Characterization of Choroideremia-Associated Deletions Reveals an Unexpected Regulation of CHM Gene Transcription.

Authors:  Tiziana Fioretti; Valentina Di Iorio; Barbara Lombardo; Francesca De Falco; Armando Cevenini; Fabio Cattaneo; Francesco Testa; Lucio Pastore; Francesca Simonelli; Gabriella Esposito
Journal:  Genes (Basel)       Date:  2021-07-22       Impact factor: 4.096

4.  Molecular genetic diagnostic techniques in choroideremia.

Authors:  Mira J B Furgoch; Jacqueline Mewes-Arès; Alina Radziwon; Ian M Macdonald
Journal:  Mol Vis       Date:  2014-04-25       Impact factor: 2.367

5.  Analysis of a large choroideremia dataset does not suggest a preference for inclusion of certain genotypes in future trials of gene therapy.

Authors:  Paul R Freund; Yuri V Sergeev; Ian M MacDonald
Journal:  Mol Genet Genomic Med       Date:  2016-02-28       Impact factor: 2.183

  5 in total

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