Literature DB >> 23271013

Construction of intersubspecific molecular genetic map of lentil based on ISSR, RAPD and SSR markers.

Mamta Gupta1, Bhawna Verma, Naresh Kumar, Rakesh K Chahota, Rajeev Rathour, Shyam K Sharma, Sabhyata Bhatia, Tilak R Sharma.   

Abstract

Lentil (Lens culinaris ssp. culinaris), is a self-pollinating diploid (2n = 2x = 14), cool-season legume crop and is consumed worldwide as a rich source of protein (~24.0%), largely in vegetarian diets. Here we report development of a genetic linkage map of Lens using 114 F(2) plants derived from the intersubspecific cross between L 830 and ILWL 77. RAPD (random amplified polymorphic DNA) primers revealed more polymorphism than ISSR (intersimple sequence repeat) and SSR (simple sequence repeat) markers. The highest proportion (30.72%) of segregation distortion was observed in RAPD markers. Of the 235 markers (34 SSR, 9 ISSR and 192 RAPD) used in the mapping study, 199 (28 SSRs, 9 ISSRs and 162 RAPDs) were mapped into 11 linkage groups (LGs), varying between 17.3 and 433.8 cM and covering 3843.4 cM, with an average marker spacing of 19.3 cM. Linkage analysis revealed nine major groups with 15 or more markers each and two small LGs with two markers each, and 36 unlinked markers. The study reported assigning of 11 new SSRs on the linkage map. Of the 66 markers with aberrant segregation, 14 were unlinked and the remaining 52 were mapped. ISSR and RAPD markers were found to be useful in map construction and saturation. The current map represents maximum coverage of lentil genome and could be used for identification of QTL regions linked to agronomic traits, and for marker-assisted selection in lentil.

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Year:  2012        PMID: 23271013     DOI: 10.1007/s12041-012-0180-4

Source DB:  PubMed          Journal:  J Genet        ISSN: 0022-1333            Impact factor:   1.166


  19 in total

1.  An intersubspecific genetic map of Lens.

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Journal:  Theor Appl Genet       Date:  2003-12-16       Impact factor: 5.699

2.  High density molecular linkage maps of the tomato and potato genomes.

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Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

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Journal:  Theor Appl Genet       Date:  2005-10-11       Impact factor: 5.699

4.  Construction of an RFLP map of barley.

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5.  A linkage map of sugar beet (Beta vulgaris L.).

Authors:  K Pillen; G Steinrücken; G Wricke; R G Herrmann; C Jung
Journal:  Theor Appl Genet       Date:  1992-06       Impact factor: 5.699

6.  Molecular marker technologies for plant improvement.

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Journal:  World J Microbiol Biotechnol       Date:  1995-07       Impact factor: 3.312

7.  A genetic linkage map of Lens sp. based on microsatellite and AFLP markers and the localization of fusarium vascular wilt resistance.

Authors:  A Hamwieh; S M Udupa; W Choumane; A Sarker; F Dreyer; C Jung; M Baum
Journal:  Theor Appl Genet       Date:  2005-01-14       Impact factor: 5.699

8.  Rapid isolation of high molecular weight plant DNA.

Authors:  M G Murray; W F Thompson
Journal:  Nucleic Acids Res       Date:  1980-10-10       Impact factor: 16.971

9.  Comprehensive structural analysis of the genome of red clover (Trifolium pratense L.).

Authors:  Shusei Sato; Sachiko Isobe; Erika Asamizu; Nobuko Ohmido; Ryohei Kataoka; Yasukazu Nakamura; Takakazu Kaneko; Nozomi Sakurai; Kenji Okumura; Irina Klimenko; Shigemi Sasamoto; Tsuyuko Wada; Akiko Watanabe; Mitsuyo Kohara; Tsunakazu Fujishiro; Satoshi Tabata
Journal:  DNA Res       Date:  2006-01-11       Impact factor: 4.458

10.  Linkages between restriction fragment length, isozyme, and morphological markers in lentil.

Authors:  M J Havey; F J Muehlbauer
Journal:  Theor Appl Genet       Date:  1989-03       Impact factor: 5.699

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  12 in total

1.  Diversification of indigenous gene- pool by using exotic germplasm in lentil (Lens culinaris Medikus subsp. culinaris).

Authors:  Jitendra Kumar; Ekta Srivastva; Mritunjay Singh; Shiv Kumar; N Nadarajan; Ashutosh Sarker
Journal:  Physiol Mol Biol Plants       Date:  2013-12-08

2.  Analysis of an intraspecific RIL population uncovers genomic segments harbouring multiple QTL for seed relevant traits in lentil (Lens culinaris L.).

Authors:  Rintu Jha; Abhishek Bohra; Uday Chand Jha; Maneet Rana; Rakesh Kumar Chahota; Shiv Kumar; Tilak Raj Sharma
Journal:  Physiol Mol Biol Plants       Date:  2017-06-26

3.  EST-SNP discovery and dense genetic mapping in lentil (Lens culinaris Medik.) enable candidate gene selection for boron tolerance.

Authors:  Sukhjiwan Kaur; Noel O I Cogan; Amber Stephens; Dianne Noy; Mirella Butsch; John W Forster; Michael Materne
Journal:  Theor Appl Genet       Date:  2013-12-27       Impact factor: 5.699

Review 4.  Current knowledge in lentil genomics and its application for crop improvement.

Authors:  Shiv Kumar; Karthika Rajendran; Jitendra Kumar; Aladdin Hamwieh; Michael Baum
Journal:  Front Plant Sci       Date:  2015-02-23       Impact factor: 5.753

5.  Construction of a Genetic Linkage Map and Identification of QTLs for Seed Weight and Seed Size Traits in Lentil (Lens culinaris Medik.).

Authors:  Priyanka Verma; Richa Goyal; R K Chahota; Tilak R Sharma; M Z Abdin; Sabhyata Bhatia
Journal:  PLoS One       Date:  2015-10-05       Impact factor: 3.240

Review 6.  Genomics-assisted breeding in four major pulse crops of developing countries: present status and prospects.

Authors:  Abhishek Bohra; Manish K Pandey; Uday C Jha; Balwant Singh; Indra P Singh; Dibendu Datta; Sushil K Chaturvedi; N Nadarajan; Rajeev K Varshney
Journal:  Theor Appl Genet       Date:  2014-04-08       Impact factor: 5.699

7.  Genetic mapping of legume orthologs reveals high conservation of synteny between lentil species and the sequenced genomes of Medicago and chickpea.

Authors:  Neha Gujaria-Verma; Sally L Vail; Noelia Carrasquilla-Garcia; R Varma Penmetsa; Douglas R Cook; Andrew D Farmer; Albert Vandenberg; Kirstin E Bett
Journal:  Front Plant Sci       Date:  2014-12-05       Impact factor: 5.753

8.  Identification of Quantitative Trait Loci Controlling Root and Shoot Traits Associated with Drought Tolerance in a Lentil (Lens culinaris Medik.) Recombinant Inbred Line Population.

Authors:  Omar Idrissi; Sripada M Udupa; Ellen De Keyser; Rebecca J McGee; Clarice J Coyne; Gopesh C Saha; Fred J Muehlbauer; Patrick Van Damme; Jan De Riek
Journal:  Front Plant Sci       Date:  2016-08-23       Impact factor: 5.753

9.  A consensus linkage map of lentil based on DArT markers from three RIL mapping populations.

Authors:  Duygu Ates; Secil Aldemir; Ahmad Alsaleh; Semih Erdogmus; Seda Nemli; Abdullah Kahriman; Hakan Ozkan; Albert Vandenberg; Bahattin Tanyolac
Journal:  PLoS One       Date:  2018-01-19       Impact factor: 3.240

10.  Identification QTLs Controlling Genes for Se Uptake in Lentil Seeds.

Authors:  Duygu Ates; Tugce Sever; Secil Aldemir; Bulent Yagmur; Hulya Yilmaz Temel; Hilal Betul Kaya; Ahmad Alsaleh; Abdullah Kahraman; Hakan Ozkan; Albert Vandenberg; Bahattin Tanyolac
Journal:  PLoS One       Date:  2016-03-15       Impact factor: 3.240

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