Literature DB >> 23269376

Interpreting protein networks with three-dimensional structures.

Joan Teyra, Philip M Kim.   

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Year:  2013        PMID： 23269376     DOI： 10.1038/nmeth.2300

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  7 in total

1.  Interrogating protein interaction networks through structural biology.

Authors:  Patrick Aloy; Robert B Russell
Journal:  Proc Natl Acad Sci U S A       Date:  2002-04-23       Impact factor: 11.205

Review 2.  Protein-protein docking tested in blind predictions: the CAPRI experiment.

Authors:  Joël Janin
Journal:  Mol Biosyst       Date:  2010-08-19

3.  Relating three-dimensional structures to protein networks provides evolutionary insights.

Authors:  Philip M Kim; Long J Lu; Yu Xia; Mark B Gerstein
Journal:  Science       Date:  2006-12-22       Impact factor: 47.728

Review 4.  Analyzing protein interaction networks using structural information.

Authors:  Christina Kiel; Pedro Beltrao; Luis Serrano
Journal:  Annu Rev Biochem       Date:  2008       Impact factor: 23.643

Review 5.  Interactome networks and human disease.

Authors:  Marc Vidal; Michael E Cusick; Albert-László Barabási
Journal:  Cell       Date:  2011-03-18       Impact factor: 41.582

6.  Interactome3D: adding structural details to protein networks.

Authors:  Roberto Mosca; Arnaud Céol; Patrick Aloy
Journal:  Nat Methods       Date:  2012-12-16       Impact factor: 28.547

7.  Bayesian modeling of the yeast SH3 domain interactome predicts spatiotemporal dynamics of endocytosis proteins.

Authors:  Raffi Tonikian; Xiaofeng Xin; Christopher P Toret; David Gfeller; Christiane Landgraf; Simona Panni; Serena Paoluzi; Luisa Castagnoli; Bridget Currell; Somasekar Seshagiri; Haiyuan Yu; Barbara Winsor; Marc Vidal; Mark B Gerstein; Gary D Bader; Rudolf Volkmer; Gianni Cesareni; David G Drubin; Philip M Kim; Sachdev S Sidhu; Charles Boone
Journal:  PLoS Biol       Date:  2009-10-20       Impact factor: 8.029
  7 in total
  4 in total

Review 1.  Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods.

Authors:  James M Krieger; Pemra Doruker; Ana Ligia Scott; David Perahia; Ivet Bahar
Journal:  Curr Opin Struct Biol       Date:  2020-07-01       Impact factor: 6.809

Review 2.  Genotype to phenotype via network analysis.

Authors:  Hannah Carter; Matan Hofree; Trey Ideker
Journal:  Curr Opin Genet Dev       Date:  2013-11-14       Impact factor: 5.578

3.  Protein-structure-guided discovery of functional mutations across 19 cancer types.

Authors:  Beifang Niu; Adam D Scott; Sohini Sengupta; Matthew H Bailey; Prag Batra; Jie Ning; Matthew A Wyczalkowski; Wen-Wei Liang; Qunyuan Zhang; Michael D McLellan; Sam Q Sun; Piyush Tripathi; Carolyn Lou; Kai Ye; R Jay Mashl; John Wallis; Michael C Wendl; Feng Chen; Li Ding
Journal:  Nat Genet       Date:  2016-06-13       Impact factor: 38.330

Review 4.  Motif mediated protein-protein interactions as drug targets.

Authors:  Carles Corbi-Verge; Philip M Kim
Journal:  Cell Commun Signal       Date:  2016-03-02       Impact factor: 5.712
  4 in total

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