Literature DB >> 23265857

Nucleic acids for the rational design of reaction circuits.

Adrien Padirac1, Teruo Fujii, Yannick Rondelez.   

Abstract

Nucleic acid-based circuits are rationally designed in vitro assemblies that can perform complex preencoded programs. They can be used to mimic in silico computations. Recent works emphasized the modularity and robustness of these circuits, which allow their scaling-up. Another new development has led to dynamic, time-responsive systems that can display emergent behaviors like oscillations. These are closely related to biological architectures and provide an in vitro model of in vivo information processing. Nucleic acid circuits have already been used to handle various processes for technological or biotechnological purposes. Future applications of these chemical smart systems will benefit from the rapidly growing ability to design, construct, and model nucleic acid circuits of increasing size.
Copyright © 2012 Elsevier Ltd. All rights reserved.

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Year:  2012        PMID: 23265857     DOI: 10.1016/j.copbio.2012.11.011

Source DB:  PubMed          Journal:  Curr Opin Biotechnol        ISSN: 0958-1669            Impact factor:   9.740


  11 in total

1.  Protease-based synthetic sensing and signal amplification.

Authors:  Viktor Stein; Kirill Alexandrov
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-29       Impact factor: 11.205

2.  DNA computing: Spatially localized DNA domino.

Authors:  André Estevez-Torres; Yannick Rondelez
Journal:  Nat Nanotechnol       Date:  2017-07-24       Impact factor: 39.213

3.  Microscopic agents programmed by DNA circuits.

Authors:  G Gines; A S Zadorin; J-C Galas; T Fujii; A Estevez-Torres; Y Rondelez
Journal:  Nat Nanotechnol       Date:  2017-01-30       Impact factor: 39.213

4.  Synthetic circuit for exact adaptation and fold-change detection.

Authors:  Jongmin Kim; Ishan Khetarpal; Shaunak Sen; Richard M Murray
Journal:  Nucleic Acids Res       Date:  2014-04-11       Impact factor: 16.971

5.  Synthesizing Configurable Biochemical Implementation of Linear Systems from Their Transfer Function Specifications.

Authors:  Tai-Yin Chiu; Hui-Ju K Chiang; Ruei-Yang Huang; Jie-Hong R Jiang; François Fages
Journal:  PLoS One       Date:  2015-09-09       Impact factor: 3.240

6.  Biomimetic Molecular Signaling using DNA Walkers on Microparticles.

Authors:  Tulsi Ram Damase; Adam Spencer; Bamidele Samuel; Peter B Allen
Journal:  Sci Rep       Date:  2017-06-22       Impact factor: 4.379

7.  Antibody-controlled actuation of DNA-based molecular circuits.

Authors:  Wouter Engelen; Lenny H H Meijer; Bram Somers; Tom F A de Greef; Maarten Merkx
Journal:  Nat Commun       Date:  2017-02-17       Impact factor: 14.919

8.  Computer-aided biochemical programming of synthetic microreactors as diagnostic devices.

Authors:  Alexis Courbet; Patrick Amar; François Fages; Eric Renard; Franck Molina
Journal:  Mol Syst Biol       Date:  2018-04-26       Impact factor: 11.429

9.  Spatiotemporal control of DNA-based chemical reaction network via electrochemical activation in microfluidics.

Authors:  Ievgen Kurylo; Guillaume Gines; Yannick Rondelez; Yannick Coffinier; Alexis Vlandas
Journal:  Sci Rep       Date:  2018-04-23       Impact factor: 4.379

10.  rEXPAR: An Isothermal Amplification Scheme That Is Robust to Autocatalytic Parasites.

Authors:  Georg Urtel; Marc Van Der Hofstadt; Jean-Christophe Galas; André Estevez-Torres
Journal:  Biochemistry       Date:  2019-05-29       Impact factor: 3.162

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