Literature DB >> 23263163

Endonuclease V: an unusual enzyme for repair of DNA deamination.

Weiguo Cao1.   

Abstract

Endonuclease V (endo V) was first discovered as the fifth endonuclease in Escherichia coli in 1977 and later rediscovered as a deoxyinosine 3' endonuclease. Decades of biochemical and genetic investigations have accumulated rich information on its role as a DNA repair enzyme for the removal of deaminated bases. Structural and biochemical analyses have offered invaluable insights on its recognition capacity, catalytic mechanism, and multitude of enzymatic activities. The roles of endo V in genome maintenance have been validated in both prokaryotic and eukaryotic organisms. The ubiquitous nature of endo V in the three domains of life: Bacteria, Archaea, and Eukaryotes, indicates its existence in the early evolutionary stage of cellular life. The application of endo V in mutation detection and DNA manipulation underscores its value beyond cellular DNA repair. This review is intended to provide a comprehensive account of the historic aspects, biochemical, structural biological, genetic and biotechnological studies of this unusual DNA repair enzyme.

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Year:  2012        PMID: 23263163     DOI: 10.1007/s00018-012-1222-z

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.261


  90 in total

1.  Mutational analysis of endonuclease V from Thermotoga maritima.

Authors:  Jianmin Huang; Jing Lu; Francis Barany; Weiguo Cao
Journal:  Biochemistry       Date:  2002-07-02       Impact factor: 3.162

Review 2.  Repair and genetic consequences of endogenous DNA base damage in mammalian cells.

Authors:  Deborah E Barnes; Tomas Lindahl
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

3.  Life in the serendipitous lane: excitement and gratification in studying DNA repair.

Authors:  Stuart Linn
Journal:  DNA Repair (Amst)       Date:  2012-07-01

4.  New family of deamination repair enzymes in uracil-DNA glycosylase superfamily.

Authors:  Hyun-Wook Lee; Brian N Dominy; Weiguo Cao
Journal:  J Biol Chem       Date:  2011-06-03       Impact factor: 5.157

5.  On the recognition and cleavage mechanism of Escherichia coli endodeoxyribonuclease V, a possible DNA repair enzyme.

Authors:  B Demple; S Linn
Journal:  J Biol Chem       Date:  1982-03-25       Impact factor: 5.157

Review 6.  Structure and function in the uracil-DNA glycosylase superfamily.

Authors:  L H Pearl
Journal:  Mutat Res       Date:  2000-08-30       Impact factor: 2.433

Review 7.  Conserved domains in DNA repair proteins and evolution of repair systems.

Authors:  L Aravind; D R Walker; E V Koonin
Journal:  Nucleic Acids Res       Date:  1999-03-01       Impact factor: 16.971

8.  Repair of deaminated base damage by Schizosaccharomyces pombe thymine DNA glycosylase.

Authors:  Liang Dong; Rongjuan Mi; Robert A Glass; John N Barry; Weiguo Cao
Journal:  DNA Repair (Amst)       Date:  2008-09-25

9.  On the divalent metal ion dependence of DNA cleavage by restriction endonucleases of the EcoRI family.

Authors:  Vera Pingoud; Wolfgang Wende; Peter Friedhoff; Monika Reuter; Jürgen Alves; Albert Jeltsch; Letif Mones; Monika Fuxreiter; Alfred Pingoud
Journal:  J Mol Biol       Date:  2009-08-13       Impact factor: 5.469

10.  The Pfam protein families database.

Authors:  Marco Punta; Penny C Coggill; Ruth Y Eberhardt; Jaina Mistry; John Tate; Chris Boursnell; Ningze Pang; Kristoffer Forslund; Goran Ceric; Jody Clements; Andreas Heger; Liisa Holm; Erik L L Sonnhammer; Sean R Eddy; Alex Bateman; Robert D Finn
Journal:  Nucleic Acids Res       Date:  2011-11-29       Impact factor: 16.971

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  16 in total

1.  Determinants of spontaneous mutation in the bacterium Escherichia coli as revealed by whole-genome sequencing.

Authors:  Patricia L Foster; Heewook Lee; Ellen Popodi; Jesse P Townes; Haixu Tang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

2.  Determinants of Base-Pair Substitution Patterns Revealed by Whole-Genome Sequencing of DNA Mismatch Repair Defective Escherichia coli.

Authors:  Patricia L Foster; Brittany A Niccum; Ellen Popodi; Jesse P Townes; Heewook Lee; Wazim MohammedIsmail; Haixu Tang
Journal:  Genetics       Date:  2018-06-15       Impact factor: 4.562

3.  Proofreading and DNA Repair Assay Using Single Nucleotide Extension and MALDI-TOF Mass Spectrometry Analysis.

Authors:  Kang-Yi Su; Steven D Goodman; Hung-Ming Lai; Rong-Syuan Yen; Wei-Yao Hu; Wern-Cherng Cheng; Liang-In Lin; Ya-Chien Yang; Woei-Horng Fang
Journal:  J Vis Exp       Date:  2018-06-19       Impact factor: 1.355

4.  Aag Hypoxanthine-DNA Glycosylase Is Synthesized in the Forespore Compartment and Involved in Counteracting the Genotoxic and Mutagenic Effects of Hypoxanthine and Alkylated Bases in DNA during Bacillus subtilis Sporulation.

Authors:  Víctor M Ayala-García; Luz I Valenzuela-García; Peter Setlow; Mario Pedraza-Reyes
Journal:  J Bacteriol       Date:  2016-11-18       Impact factor: 3.490

Review 5.  Functional interplay between ATM/ATR-mediated DNA damage response and DNA repair pathways in oxidative stress.

Authors:  Shan Yan; Melanie Sorrell; Zachary Berman
Journal:  Cell Mol Life Sci       Date:  2014-06-20       Impact factor: 9.261

6.  Deoxyinosine repair in nuclear extracts of human cells.

Authors:  Chia-Chia Lee; Ya-Chien Yang; Steven D Goodman; Shi Chen; Teng-Yung Huang; Wern-Cherng Cheng; Liang-In Lin; Woei-Horng Fang
Journal:  Cell Biosci       Date:  2015-09-08       Impact factor: 7.133

7.  A novel endonuclease that may be responsible for damaged DNA base repair in Pyrococcus furiosus.

Authors:  Miyako Shiraishi; Sonoko Ishino; Takeshi Yamagami; Yuriko Egashira; Shinichi Kiyonari; Yoshizumi Ishino
Journal:  Nucleic Acids Res       Date:  2015-02-18       Impact factor: 16.971

Review 8.  Diversity of Endonuclease V: From DNA Repair to RNA Editing.

Authors:  Isao Kuraoka
Journal:  Biomolecules       Date:  2015-09-24

9.  Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways.

Authors:  Yu-Yuan Hsiao; Woei-Horng Fang; Chia-Chia Lee; Yi-Ping Chen; Hanna S Yuan
Journal:  PLoS Biol       Date:  2014-03-04       Impact factor: 8.029

10.  Crystal structure of E. coli endonuclease V, an essential enzyme for deamination repair.

Authors:  Zhemin Zhang; Qian Jia; Chun Zhou; Wei Xie
Journal:  Sci Rep       Date:  2015-08-05       Impact factor: 4.379

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