Literature DB >> 23262684

Three dimensional HiLo-based structured illumination for a digital scanned laser sheet microscopy (DSLM) in thick tissue imaging.

Dipanjan Bhattacharya1, Vijay Raj Singh, Chen Zhi, Peter T C So, Paul Matsudaira, George Barbastathis.   

Abstract

Laser sheet based microscopy has become widely accepted as an effective active illumination method for real time three-dimensional (3D) imaging of biological tissue samples. The light sheet geometry, where the camera is oriented perpendicular to the sheet itself, provides an effective method of eliminating some of the scattered light and minimizing the sample exposure to radiation. However, residual background noise still remains, limiting the contrast and visibility of potentially interesting features in the samples. In this article, we investigate additional structuring of the illumination for improved background rejection, and propose a new technique, "3D HiLo" where we combine two HiLo images processed from orthogonal directions to improve the condition of the 3D reconstruction. We present a comparative study of conventional structured illumination based demodulation methods, namely 3Phase and HiLo with a newly implemented 3D HiLo approach and demonstrate that the latter yields superior signal-to-background ratio in both lateral and axial dimensions, while simultaneously suppressing image processing artifacts.

Mesh:

Year:  2012        PMID: 23262684      PMCID: PMC3601593          DOI: 10.1364/OE.20.027337

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  14 in total

1.  Wide-field optically sectioning fluorescence microscopy with laser illumination.

Authors:  M A Neil; A Squire; R Juskaitis; P I Bastiaens; T Wilson
Journal:  J Microsc       Date:  2000-01       Impact factor: 1.758

2.  Structured illumination microscopy of autofluorescent aggregations in human tissue.

Authors:  Gerrit Best; Roman Amberger; David Baddeley; Thomas Ach; Stefan Dithmar; Rainer Heintzmann; Christoph Cremer
Journal:  Micron       Date:  2010-09-15       Impact factor: 2.251

3.  Image formation in structured illumination wide-field fluorescence microscopy.

Authors:  Dejan Karadaglić; Tony Wilson
Journal:  Micron       Date:  2008-02-02       Impact factor: 2.251

4.  Method of obtaining optical sectioning by using structured light in a conventional microscope.

Authors:  M A Neil; R Juskaitis; T Wilson
Journal:  Opt Lett       Date:  1997-12-15       Impact factor: 3.776

5.  Reconstruction of zebrafish early embryonic development by scanned light sheet microscopy.

Authors:  Philipp J Keller; Annette D Schmidt; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Science       Date:  2008-10-09       Impact factor: 47.728

6.  Orthogonal-plane fluorescence optical sectioning: three-dimensional imaging of macroscopic biological specimens.

Authors:  A H Voie; D H Burns; F A Spelman
Journal:  J Microsc       Date:  1993-06       Impact factor: 1.758

7.  Depth-resolved image mapping spectrometer (IMS) with structured illumination.

Authors:  Liang Gao; Noah Bedard; Nathan Hagen; Robert T Kester; Tomasz S Tkaczyk
Journal:  Opt Express       Date:  2011-08-29       Impact factor: 3.894

8.  Scanning thin-sheet laser imaging microscopy (sTSLIM) with structured illumination and HiLo background rejection.

Authors:  Tobias J Schröter; Shane B Johnson; Kerstin John; Peter A Santi
Journal:  Biomed Opt Express       Date:  2011-12-19       Impact factor: 3.732

9.  Image formation by linear and nonlinear digital scanned light-sheet fluorescence microscopy with Gaussian and Bessel beam profiles.

Authors:  Omar E Olarte; Jacob Licea-Rodriguez; Jonathan A Palero; Emilio J Gualda; David Artigas; Jürgen Mayer; Jim Swoger; James Sharpe; Israel Rocha-Mendoza; Raul Rangel-Rojo; Pablo Loza-Alvarez
Journal:  Biomed Opt Express       Date:  2012-06-04       Impact factor: 3.732

10.  Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy.

Authors:  Philipp J Keller; Annette D Schmidt; Anthony Santella; Khaled Khairy; Zhirong Bao; Joachim Wittbrodt; Ernst H K Stelzer
Journal:  Nat Methods       Date:  2010-07-04       Impact factor: 28.547

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  9 in total

1.  Depth resolved hyperspectral imaging spectrometer based on structured light illumination and Fourier transform interferometry.

Authors:  Heejin Choi; Dushan Wadduwage; Paul T Matsudaira; Peter T C So
Journal:  Biomed Opt Express       Date:  2014-09-09       Impact factor: 3.732

2.  Improved contrast in inverted selective plane illumination microscopy of thick tissues using confocal detection and structured illumination.

Authors:  Bihe Hu; Daniel Bolus; J Quincy Brown
Journal:  Biomed Opt Express       Date:  2017-11-13       Impact factor: 3.732

3.  Three-dimensional image cytometer based on widefield structured light microscopy and high-speed remote depth scanning.

Authors:  Heejin Choi; Dushan N Wadduwage; Ting Yuan Tu; Paul Matsudaira; Peter T C So
Journal:  Cytometry A       Date:  2014-10-28       Impact factor: 4.355

4.  Talbot holographic illumination nonscanning (THIN) fluorescence microscopy.

Authors:  Yuan Luo; Vijay Raj Singh; Dipanjan Bhattacharya; Elijah Y S Yew; Jui-Chang Tsai; Sung-Liang Yu; Hsi-Hsun Chen; Jau-Min Wong; Paul Matsudaira; Peter T C So; George Barbastathis
Journal:  Laser Photon Rev       Date:  2014-08-08       Impact factor: 13.138

5.  Image improvement of temporal focusing multiphoton microscopy via superior spatial modulation excitation and Hilbert-Huang transform decomposition.

Authors:  Yvonne Yuling Hu; Chun-Yu Lin; Chia-Yuan Chang; Yuan-Long Lo; Shean-Jen Chen
Journal:  Sci Rep       Date:  2022-06-16       Impact factor: 4.996

6.  Temporal focusing multiphoton microscopy with optimized parallel multiline scanning for fast biotissue imaging.

Authors:  Chia-Yuan Chang; Chun-Yun Lin; Yvonne Y Hu; Sheng-Feng Tsai; Feng-Chun Hsu; Shean-Jen Chen
Journal:  J Biomed Opt       Date:  2021-01       Impact factor: 3.170

7.  Improvement of axial resolution and contrast in temporally focused widefield two-photon microscopy with structured light illumination.

Authors:  Heejin Choi; Elijah Y S Yew; Bertan Hallacoglu; Sergio Fantini; Colin J R Sheppard; Peter T C So
Journal:  Biomed Opt Express       Date:  2013-06-03       Impact factor: 3.732

8.  Learning to synthesize: robust phase retrieval at low photon counts.

Authors:  Mo Deng; Shuai Li; Alexandre Goy; Iksung Kang; George Barbastathis
Journal:  Light Sci Appl       Date:  2020-03-09       Impact factor: 17.782

9.  Strain maps characterize the symmetry of convergence and extension patterns during zebrafish gastrulation.

Authors:  Dipanjan Bhattacharya; Jun Zhong; Sahar Tavakoli; Alexandre Kabla; Paul Matsudaira
Journal:  Sci Rep       Date:  2021-09-29       Impact factor: 4.379

  9 in total

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