Literature DB >> 23259942

The autism sequencing consortium: large-scale, high-throughput sequencing in autism spectrum disorders.

Joseph D Buxbaum1, Mark J Daly, Bernie Devlin, Thomas Lehner, Kathryn Roeder, Matthew W State.   

Abstract

Research during the past decade has seen significant progress in the understanding of the genetic architecture of autism spectrum disorders (ASDs), with gene discovery accelerating as the characterization of genomic variation has become increasingly comprehensive. At the same time, this research has highlighted ongoing challenges. Here we address the enormous impact of high-throughput sequencing (HTS) on ASD gene discovery, outline a consensus view for leveraging this technology, and describe a large multisite collaboration developed to accomplish these goals. Similar approaches could prove effective for severe neurodevelopmental disorders more broadly.
Copyright © 2012 Elsevier Inc. All rights reserved.

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Year:  2012        PMID: 23259942      PMCID: PMC3863639          DOI: 10.1016/j.neuron.2012.12.008

Source DB:  PubMed          Journal:  Neuron        ISSN: 0896-6273            Impact factor:   17.173


  15 in total

Review 1.  Do common variants play a role in risk for autism? Evidence and theoretical musings.

Authors:  Bernie Devlin; Nadine Melhem; Kathryn Roeder
Journal:  Brain Res       Date:  2010-11-12       Impact factor: 3.252

2.  Genetic heritability and shared environmental factors among twin pairs with autism.

Authors:  Joachim Hallmayer; Sue Cleveland; Andrea Torres; Jennifer Phillips; Brianne Cohen; Tiffany Torigoe; Janet Miller; Angie Fedele; Jack Collins; Karen Smith; Linda Lotspeich; Lisa A Croen; Sally Ozonoff; Clara Lajonchere; Judith K Grether; Neil Risch
Journal:  Arch Gen Psychiatry       Date:  2011-07-04

Review 3.  Etiological heterogeneity in autism spectrum disorders: more than 100 genetic and genomic disorders and still counting.

Authors:  Catalina Betancur
Journal:  Brain Res       Date:  2010-12-01       Impact factor: 3.252

Review 4.  Autism spectrum disorders and autistic traits: a decade of new twin studies.

Authors:  Angelica Ronald; Rosa A Hoekstra
Journal:  Am J Med Genet B Neuropsychiatr Genet       Date:  2011-01-13       Impact factor: 3.568

5.  De novo mutations revealed by whole-exome sequencing are strongly associated with autism.

Authors:  Stephan J Sanders; Michael T Murtha; Abha R Gupta; John D Murdoch; Melanie J Raubeson; A Jeremy Willsey; A Gulhan Ercan-Sencicek; Nicholas M DiLullo; Neelroop N Parikshak; Jason L Stein; Michael F Walker; Gordon T Ober; Nicole A Teran; Youeun Song; Paul El-Fishawy; Ryan C Murtha; Murim Choi; John D Overton; Robert D Bjornson; Nicholas J Carriero; Kyle A Meyer; Kaya Bilguvar; Shrikant M Mane; Nenad Sestan; Richard P Lifton; Murat Günel; Kathryn Roeder; Daniel H Geschwind; Bernie Devlin; Matthew W State
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

6.  Patterns and rates of exonic de novo mutations in autism spectrum disorders.

Authors:  Benjamin M Neale; Yan Kou; Li Liu; Avi Ma'ayan; Kaitlin E Samocha; Aniko Sabo; Chiao-Feng Lin; Christine Stevens; Li-San Wang; Vladimir Makarov; Paz Polak; Seungtai Yoon; Jared Maguire; Emily L Crawford; Nicholas G Campbell; Evan T Geller; Otto Valladares; Chad Schafer; Han Liu; Tuo Zhao; Guiqing Cai; Jayon Lihm; Ruth Dannenfelser; Omar Jabado; Zuleyma Peralta; Uma Nagaswamy; Donna Muzny; Jeffrey G Reid; Irene Newsham; Yuanqing Wu; Lora Lewis; Yi Han; Benjamin F Voight; Elaine Lim; Elizabeth Rossin; Andrew Kirby; Jason Flannick; Menachem Fromer; Khalid Shakir; Tim Fennell; Kiran Garimella; Eric Banks; Ryan Poplin; Stacey Gabriel; Mark DePristo; Jack R Wimbish; Braden E Boone; Shawn E Levy; Catalina Betancur; Shamil Sunyaev; Eric Boerwinkle; Joseph D Buxbaum; Edwin H Cook; Bernie Devlin; Richard A Gibbs; Kathryn Roeder; Gerard D Schellenberg; James S Sutcliffe; Mark J Daly
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

7.  A copy number variation morbidity map of developmental delay.

Authors:  Gregory M Cooper; Bradley P Coe; Santhosh Girirajan; Jill A Rosenfeld; Tiffany H Vu; Carl Baker; Charles Williams; Heather Stalker; Rizwan Hamid; Vickie Hannig; Hoda Abdel-Hamid; Patricia Bader; Elizabeth McCracken; Dmitriy Niyazov; Kathleen Leppig; Heidi Thiese; Marybeth Hummel; Nora Alexander; Jerome Gorski; Jennifer Kussmann; Vandana Shashi; Krys Johnson; Catherine Rehder; Blake C Ballif; Lisa G Shaffer; Evan E Eichler
Journal:  Nat Genet       Date:  2011-08-14       Impact factor: 38.330

8.  Individual common variants exert weak effects on the risk for autism spectrum disorders.

Authors:  Richard Anney; Lambertus Klei; Dalila Pinto; Joana Almeida; Elena Bacchelli; Gillian Baird; Nadia Bolshakova; Sven Bölte; Patrick F Bolton; Thomas Bourgeron; Sean Brennan; Jessica Brian; Jillian Casey; Judith Conroy; Catarina Correia; Christina Corsello; Emily L Crawford; Maretha de Jonge; Richard Delorme; Eftichia Duketis; Frederico Duque; Annette Estes; Penny Farrar; Bridget A Fernandez; Susan E Folstein; Eric Fombonne; John Gilbert; Christopher Gillberg; Joseph T Glessner; Andrew Green; Jonathan Green; Stephen J Guter; Elizabeth A Heron; Richard Holt; Jennifer L Howe; Gillian Hughes; Vanessa Hus; Roberta Igliozzi; Suma Jacob; Graham P Kenny; Cecilia Kim; Alexander Kolevzon; Vlad Kustanovich; Clara M Lajonchere; Janine A Lamb; Miriam Law-Smith; Marion Leboyer; Ann Le Couteur; Bennett L Leventhal; Xiao-Qing Liu; Frances Lombard; Catherine Lord; Linda Lotspeich; Sabata C Lund; Tiago R Magalhaes; Carine Mantoulan; Christopher J McDougle; Nadine M Melhem; Alison Merikangas; Nancy J Minshew; Ghazala K Mirza; Jeff Munson; Carolyn Noakes; Gudrun Nygren; Katerina Papanikolaou; Alistair T Pagnamenta; Barbara Parrini; Tara Paton; Andrew Pickles; David J Posey; Fritz Poustka; Jiannis Ragoussis; Regina Regan; Wendy Roberts; Kathryn Roeder; Bernadette Roge; Michael L Rutter; Sabine Schlitt; Naisha Shah; Val C Sheffield; Latha Soorya; Inês Sousa; Vera Stoppioni; Nuala Sykes; Raffaella Tancredi; Ann P Thompson; Susanne Thomson; Ana Tryfon; John Tsiantis; Herman Van Engeland; John B Vincent; Fred Volkmar; J A S Vorstman; Simon Wallace; Kirsty Wing; Kerstin Wittemeyer; Shawn Wood; Danielle Zurawiecki; Lonnie Zwaigenbaum; Anthony J Bailey; Agatino Battaglia; Rita M Cantor; Hilary Coon; Michael L Cuccaro; Geraldine Dawson; Sean Ennis; Christine M Freitag; Daniel H Geschwind; Jonathan L Haines; Sabine M Klauck; William M McMahon; Elena Maestrini; Judith Miller; Anthony P Monaco; Stanley F Nelson; John I Nurnberger; Guiomar Oliveira; Jeremy R Parr; Margaret A Pericak-Vance; Joseph Piven; Gerard D Schellenberg; Stephen W Scherer; Astrid M Vicente; Thomas H Wassink; Ellen M Wijsman; Catalina Betancur; Joseph D Buxbaum; Edwin H Cook; Louise Gallagher; Michael Gill; Joachim Hallmayer; Andrew D Paterson; James S Sutcliffe; Peter Szatmari; Veronica J Vieland; Hakon Hakonarson; Bernie Devlin
Journal:  Hum Mol Genet       Date:  2012-07-26       Impact factor: 6.150

9.  Common genetic variants, acting additively, are a major source of risk for autism.

Authors:  Lambertus Klei; Stephan J Sanders; Michael T Murtha; Vanessa Hus; Jennifer K Lowe; A Jeremy Willsey; Daniel Moreno-De-Luca; Timothy W Yu; Eric Fombonne; Daniel Geschwind; Dorothy E Grice; David H Ledbetter; Catherine Lord; Shrikant M Mane; Christa Lese Martin; Donna M Martin; Eric M Morrow; Christopher A Walsh; Nadine M Melhem; Pauline Chaste; James S Sutcliffe; Matthew W State; Edwin H Cook; Kathryn Roeder; Bernie Devlin
Journal:  Mol Autism       Date:  2012-10-15       Impact factor: 7.509

10.  Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations.

Authors:  Brian J O'Roak; Pelagia Deriziotis; Choli Lee; Laura Vives; Jerrod J Schwartz; Santhosh Girirajan; Emre Karakoc; Alexandra P Mackenzie; Sarah B Ng; Carl Baker; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Simon E Fisher; Jay Shendure; Evan E Eichler
Journal:  Nat Genet       Date:  2011-05-15       Impact factor: 38.330

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  87 in total

1.  Paternal sperm DNA methylation associated with early signs of autism risk in an autism-enriched cohort.

Authors:  Jason I Feinberg; Kelly M Bakulski; Andrew E Jaffe; Rakel Tryggvadottir; Shannon C Brown; Lynn R Goldman; Lisa A Croen; Irva Hertz-Picciotto; Craig J Newschaffer; M Daniele Fallin; Andrew P Feinberg
Journal:  Int J Epidemiol       Date:  2015-04-14       Impact factor: 7.196

2.  Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder.

Authors:  Ryan K C Yuen; Daniele Merico; Matt Bookman; Jennifer L Howe; Bhooma Thiruvahindrapuram; Rohan V Patel; Joe Whitney; Nicole Deflaux; Jonathan Bingham; Zhuozhi Wang; Giovanna Pellecchia; Janet A Buchanan; Susan Walker; Christian R Marshall; Mohammed Uddin; Mehdi Zarrei; Eric Deneault; Lia D'Abate; Ada J S Chan; Stephanie Koyanagi; Tara Paton; Sergio L Pereira; Ny Hoang; Worrawat Engchuan; Edward J Higginbotham; Karen Ho; Sylvia Lamoureux; Weili Li; Jeffrey R MacDonald; Thomas Nalpathamkalam; Wilson W L Sung; Fiona J Tsoi; John Wei; Lizhen Xu; Anne-Marie Tasse; Emily Kirby; William Van Etten; Simon Twigger; Wendy Roberts; Irene Drmic; Sanne Jilderda; Bonnie MacKinnon Modi; Barbara Kellam; Michael Szego; Cheryl Cytrynbaum; Rosanna Weksberg; Lonnie Zwaigenbaum; Marc Woodbury-Smith; Jessica Brian; Lili Senman; Alana Iaboni; Krissy Doyle-Thomas; Ann Thompson; Christina Chrysler; Jonathan Leef; Tal Savion-Lemieux; Isabel M Smith; Xudong Liu; Rob Nicolson; Vicki Seifer; Angie Fedele; Edwin H Cook; Stephen Dager; Annette Estes; Louise Gallagher; Beth A Malow; Jeremy R Parr; Sarah J Spence; Jacob Vorstman; Brendan J Frey; James T Robinson; Lisa J Strug; Bridget A Fernandez; Mayada Elsabbagh; Melissa T Carter; Joachim Hallmayer; Bartha M Knoppers; Evdokia Anagnostou; Peter Szatmari; Robert H Ring; David Glazer; Mathew T Pletcher; Stephen W Scherer
Journal:  Nat Neurosci       Date:  2017-03-06       Impact factor: 24.884

3.  Epigenetic dysregulation of SHANK3 in brain tissues from individuals with autism spectrum disorders.

Authors:  Li Zhu; Xiaoming Wang; Xin-Lei Li; Aaron Towers; Xinyu Cao; Ping Wang; Rachel Bowman; Hyuna Yang; Jennifer Goldstein; Yi-Ju Li; Yong-Hui Jiang
Journal:  Hum Mol Genet       Date:  2013-11-01       Impact factor: 6.150

4.  Systematic reconstruction of autism biology from massive genetic mutation profiles.

Authors:  Weijun Luo; Chaolin Zhang; Yong-Hui Jiang; Cory R Brouwer
Journal:  Sci Adv       Date:  2018-04-11       Impact factor: 14.136

5.  Whole Genome Sequencing as a Genetic Test for Autism Spectrum Disorder: From Bench to Bedside and then Back Again.

Authors:  Michael J Szego; Ma'n H Zawati
Journal:  J Can Acad Child Adolesc Psychiatry       Date:  2016-05-01

6.  Whole exome sequencing in molecular diagnostics of cancer decreases over time: evidence from a cost analysis in the French setting.

Authors:  I Borget; J Bonastre; Arnaud Bayle; N Droin; B Besse; Z Zou; Y Boursin; S Rissel; E Solary; L Lacroix; E Rouleau
Journal:  Eur J Health Econ       Date:  2021-03-25

Review 7.  DNA Methylation and Susceptibility to Autism Spectrum Disorder.

Authors:  Martine W Tremblay; Yong-Hui Jiang
Journal:  Annu Rev Med       Date:  2019-01-27       Impact factor: 13.739

Review 8.  Autism spectrum disorder: advances in evidence-based practice.

Authors:  Evdokia Anagnostou; Lonnie Zwaigenbaum; Peter Szatmari; Eric Fombonne; Bridget A Fernandez; Marc Woodbury-Smith; Jessica Brian; Susan Bryson; Isabel M Smith; Irene Drmic; Janet A Buchanan; Wendy Roberts; Stephen W Scherer
Journal:  CMAJ       Date:  2014-01-13       Impact factor: 8.262

9.  CANOES: detecting rare copy number variants from whole exome sequencing data.

Authors:  Daniel Backenroth; Jason Homsy; Laura R Murillo; Joe Glessner; Edwin Lin; Martina Brueckner; Richard Lifton; Elizabeth Goldmuntz; Wendy K Chung; Yufeng Shen
Journal:  Nucleic Acids Res       Date:  2014-04-25       Impact factor: 16.971

10.  NETWORK ASSISTED ANALYSIS TO REVEAL THE GENETIC BASIS OF AUTISM.

Authors:  Li Liu; Jing Lei; Kathryn Roeder
Journal:  Ann Appl Stat       Date:  2015-11-02       Impact factor: 2.083

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