Literature DB >> 23258410

Comparative analysis of bat genomes provides insight into the evolution of flight and immunity.

Guojie Zhang1, Christopher Cowled, Zhengli Shi, Zhiyong Huang, Kimberly A Bishop-Lilly, Xiaodong Fang, James W Wynne, Zhiqiang Xiong, Michelle L Baker, Wei Zhao, Mary Tachedjian, Yabing Zhu, Peng Zhou, Xuanting Jiang, Justin Ng, Lan Yang, Lijun Wu, Jin Xiao, Yue Feng, Yuanxin Chen, Xiaoqing Sun, Yong Zhang, Glenn A Marsh, Gary Crameri, Christopher C Broder, Kenneth G Frey, Lin-Fa Wang, Jun Wang.   

Abstract

Bats are the only mammals capable of sustained flight and are notorious reservoir hosts for some of the world's most highly pathogenic viruses, including Nipah, Hendra, Ebola, and severe acute respiratory syndrome (SARS). To identify genetic changes associated with the development of bat-specific traits, we performed whole-genome sequencing and comparative analyses of two distantly related species, fruit bat Pteropus alecto and insectivorous bat Myotis davidii. We discovered an unexpected concentration of positively selected genes in the DNA damage checkpoint and nuclear factor κB pathways that may be related to the origin of flight, as well as expansion and contraction of important gene families. Comparison of bat genomes with other mammalian species has provided new insights into bat biology and evolution.

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Year:  2012        PMID: 23258410      PMCID: PMC8782153          DOI: 10.1126/science.1230835

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  46 in total

1.  BLAT--the BLAST-like alignment tool.

Authors:  W James Kent
Journal:  Genome Res       Date:  2002-04       Impact factor: 9.043

Review 2.  DNA viruses and the cellular DNA-damage response.

Authors:  Andrew S Turnell; Roger J Grand
Journal:  J Gen Virol       Date:  2012-08-01       Impact factor: 3.891

3.  Ab initio gene finding in Drosophila genomic DNA.

Authors:  A A Salamov; V V Solovyev
Journal:  Genome Res       Date:  2000-04       Impact factor: 9.043

4.  The c-Rel Transcription Factor in Development and Disease.

Authors:  Thomas D Gilmore; Steve Gerondakis
Journal:  Genes Cancer       Date:  2011-07

5.  PAML: a program package for phylogenetic analysis by maximum likelihood.

Authors:  Z Yang
Journal:  Comput Appl Biosci       Date:  1997-10

6.  Nucleo-cytoplasmic shuttling of the hdm2 oncoprotein regulates the levels of the p53 protein via a pathway used by the human immunodeficiency virus rev protein.

Authors:  J Roth; M Dobbelstein; D A Freedman; T Shenk; A J Levine
Journal:  EMBO J       Date:  1998-01-15       Impact factor: 11.598

7.  Endogenous viral elements in animal genomes.

Authors:  Aris Katzourakis; Robert J Gifford
Journal:  PLoS Genet       Date:  2010-11-18       Impact factor: 5.917

Review 8.  ATM deficiency and oxidative stress: a new dimension of defective response to DNA damage.

Authors:  Ari Barzilai; Galit Rotman; Yosef Shiloh
Journal:  DNA Repair (Amst)       Date:  2002-01-22

9.  Genome sequencing reveals insights into physiology and longevity of the naked mole rat.

Authors:  Eun Bae Kim; Xiaodong Fang; Alexey A Fushan; Zhiyong Huang; Alexei V Lobanov; Lijuan Han; Stefano M Marino; Xiaoqing Sun; Anton A Turanov; Pengcheng Yang; Sun Hee Yim; Xiang Zhao; Marina V Kasaikina; Nina Stoletzki; Chunfang Peng; Paz Polak; Zhiqiang Xiong; Adam Kiezun; Yabing Zhu; Yuanxin Chen; Gregory V Kryukov; Qiang Zhang; Leonid Peshkin; Lan Yang; Roderick T Bronson; Rochelle Buffenstein; Bo Wang; Changlei Han; Qiye Li; Li Chen; Wei Zhao; Shamil R Sunyaev; Thomas J Park; Guojie Zhang; Jun Wang; Vadim N Gladyshev
Journal:  Nature       Date:  2011-10-12       Impact factor: 49.962

10.  Comparative genomics of natural killer cell receptor gene clusters.

Authors:  James Kelley; Lutz Walter; John Trowsdale
Journal:  PLoS Genet       Date:  2005-08       Impact factor: 5.917

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  243 in total

1.  Endless paces of degeneration--applying comparative genomics to study evolution's moulding of longevity.

Authors:  João Pedro de Magalhães; Michael Kean
Journal:  EMBO Rep       Date:  2013-07-12       Impact factor: 8.807

Review 2.  Mechanisms of cancer resistance in long-lived mammals.

Authors:  Andrei Seluanov; Vadim N Gladyshev; Jan Vijg; Vera Gorbunova
Journal:  Nat Rev Cancer       Date:  2018-07       Impact factor: 60.716

3.  The IFN Response in Bats Displays Distinctive IFN-Stimulated Gene Expression Kinetics with Atypical RNASEL Induction.

Authors:  Pamela C De La Cruz-Rivera; Mohammed Kanchwala; Hanquan Liang; Ashwani Kumar; Lin-Fa Wang; Chao Xing; John W Schoggins
Journal:  J Immunol       Date:  2017-11-27       Impact factor: 5.422

4.  Contraction of the type I IFN locus and unusual constitutive expression of IFN-α in bats.

Authors:  Peng Zhou; Mary Tachedjian; James W Wynne; Victoria Boyd; Jie Cui; Ina Smith; Christopher Cowled; Justin H J Ng; Lawrence Mok; Wojtek P Michalski; Ian H Mendenhall; Gilda Tachedjian; Lin-Fa Wang; Michelle L Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2016-02-22       Impact factor: 11.205

5.  Fruits of virus discovery: new pathogens and new experimental models.

Authors:  David Wang
Journal:  J Virol       Date:  2014-11-19       Impact factor: 5.103

Review 6.  Ecological dynamics of emerging bat virus spillover.

Authors:  Raina K Plowright; Peggy Eby; Peter J Hudson; Ina L Smith; David Westcott; Wayne L Bryden; Deborah Middleton; Peter A Reid; Rosemary A McFarlane; Gerardo Martin; Gary M Tabor; Lee F Skerratt; Dale L Anderson; Gary Crameri; David Quammen; David Jordan; Paul Freeman; Lin-Fa Wang; Jonathan H Epstein; Glenn A Marsh; Nina Y Kung; Hamish McCallum
Journal:  Proc Biol Sci       Date:  2015-01-07       Impact factor: 5.349

Review 7.  The Genome 10K Project: a way forward.

Authors:  Klaus-Peter Koepfli; Benedict Paten; Stephen J O'Brien
Journal:  Annu Rev Anim Biosci       Date:  2015       Impact factor: 8.923

8.  A pro longevity role for cellular senescence.

Authors:  Amany Attaallah; Monia Lenzi; Silvia Marchionni; Giacomo Bincoletto; Veronica Cocchi; Eleonora Croco; Patrizia Hrelia; Silvana Hrelia; Christian Sell; Antonello Lorenzini
Journal:  Geroscience       Date:  2019-05-16       Impact factor: 7.713

9.  Handling Stress and Sample Storage Are Associated with Weaker Complement-Mediated Bactericidal Ability in Birds but Not Bats.

Authors:  Daniel J Becker; Gábor Á Czirják; Agnieszka Rynda-Apple; Raina K Plowright
Journal:  Physiol Biochem Zool       Date:  2019 Jan/Feb       Impact factor: 2.247

10.  Bats are a major natural reservoir for hepaciviruses and pegiviruses.

Authors:  Phenix-Lan Quan; Cadhla Firth; Juliette M Conte; Simon H Williams; Carlos M Zambrana-Torrelio; Simon J Anthony; James A Ellison; Amy T Gilbert; Ivan V Kuzmin; Michael Niezgoda; Modupe O V Osinubi; Sergio Recuenco; Wanda Markotter; Robert F Breiman; Lems Kalemba; Jean Malekani; Kim A Lindblade; Melinda K Rostal; Rafael Ojeda-Flores; Gerardo Suzan; Lora B Davis; Dianna M Blau; Albert B Ogunkoya; Danilo A Alvarez Castillo; David Moran; Sali Ngam; Dudu Akaibe; Bernard Agwanda; Thomas Briese; Jonathan H Epstein; Peter Daszak; Charles E Rupprecht; Edward C Holmes; W Ian Lipkin
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-22       Impact factor: 11.205

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