Literature DB >> 23255328

Identifying multiple populations from single-molecule lifetime distributions.

Mark Kastantin1, Daniel K Schwartz.   

Abstract

A major advantage of single-molecule methods over ensemble-averaging techniques involves the ability to characterize heterogeneity through the identification of multiple molecular populations. It can be challenging, however, to determine absolute values of dynamic parameters (and to relate these values to those determined from a conventional method) because characteristic timescales of various populations may vary over many orders of magnitude, and under a given set of experimental conditions instrumental sensitivity to various populations may be unequal. Using data obtained from the single-molecule tracking microscopy of fibrinogen protein adsorption and desorption, it is shown that by performing a combined analysis of molecular trajectories obtained using a range of acquisition times, it is possible to extract quantitative absolute values of multiple population fractions and residence times (with well-defined uncertainties), even when these values span many orders of magnitude. In particular, as many as six distinct populations are rigorously identified, exhibiting characteristic timescales that vary over nearly three orders of magnitude with population fractions as small as one part in a thousand. This approach will lead to better comparability between single-molecule experiments and may be useful in connecting single-molecule to ensemble-averaged observations.
Copyright © 2013 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Year:  2012        PMID: 23255328     DOI: 10.1002/cphc.201200838

Source DB:  PubMed          Journal:  Chemphyschem        ISSN: 1439-4235            Impact factor:   3.102


  5 in total

1.  Single-molecule resolution of protein structure and interfacial dynamics on biomaterial surfaces.

Authors:  Sean Yu McLoughlin; Mark Kastantin; Daniel K Schwartz; Joel L Kaar
Journal:  Proc Natl Acad Sci U S A       Date:  2013-11-14       Impact factor: 11.205

2.  Single-molecule analysis reveals human UV-damaged DNA-binding protein (UV-DDB) dimerizes on DNA via multiple kinetic intermediates.

Authors:  Harshad Ghodke; Hong Wang; Ching L Hsieh; Selamawit Woldemeskel; Simon C Watkins; Vesna Rapić-Otrin; Bennett Van Houten
Journal:  Proc Natl Acad Sci U S A       Date:  2014-04-23       Impact factor: 11.205

3.  Reversible Adsorption Kinetics of Near Surface Dimer Colloids.

Authors:  Paul F Salipante; Steven D Hudson
Journal:  Langmuir       Date:  2016-08-17       Impact factor: 3.882

Review 4.  A bottom-up approach to understanding protein layer formation at solid-liquid interfaces.

Authors:  Mark Kastantin; Blake B Langdon; Daniel K Schwartz
Journal:  Adv Colloid Interface Sci       Date:  2013-12-28       Impact factor: 12.984

5.  Interfacial protein-protein associations.

Authors:  Blake B Langdon; Mark Kastantin; Robert Walder; Daniel K Schwartz
Journal:  Biomacromolecules       Date:  2013-12-02       Impact factor: 6.988

  5 in total

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