Literature DB >> 23255135

A rare variant, which destroys a FoxA1 site at 8q24, is associated with prostate cancer risk.

Dennis J Hazelett, Simon G Coetzee, Gerhard A Coetzee.   

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Year:  2012        PMID: 23255135      PMCID: PMC3575466          DOI: 10.4161/cc.23201

Source DB:  PubMed          Journal:  Cell Cycle        ISSN: 1551-4005            Impact factor:   4.534


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  9 in total

1.  Integrative genomics analysis reveals silencing of beta-adrenergic signaling by polycomb in prostate cancer.

Authors:  Jindan Yu; Qi Cao; Rohit Mehra; Bharathi Laxman; Jianjun Yu; Scott A Tomlins; Chad J Creighton; Saravana M Dhanasekaran; Ronglai Shen; Guoan Chen; David S Morris; Victor E Marquez; Rajal B Shah; Debashis Ghosh; Sooryanarayana Varambally; Arul M Chinnaiyan
Journal:  Cancer Cell       Date:  2007-11       Impact factor: 31.743

2.  The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer.

Authors:  Mark M Pomerantz; Nasim Ahmadiyeh; Li Jia; Paula Herman; Michael P Verzi; Harshavardhan Doddapaneni; Christine A Beckwith; Jennifer A Chan; Adam Hills; Matt Davis; Keluo Yao; Sarah M Kehoe; Heinz-Josef Lenz; Christopher A Haiman; Chunli Yan; Brian E Henderson; Baruch Frenkel; Jordi Barretina; Adam Bass; Josep Tabernero; José Baselga; Meredith M Regan; J Robert Manak; Ramesh Shivdasani; Gerhard A Coetzee; Matthew L Freedman
Journal:  Nat Genet       Date:  2009-06-28       Impact factor: 38.330

3.  A study based on whole-genome sequencing yields a rare variant at 8q24 associated with prostate cancer.

Authors:  Julius Gudmundsson; Patrick Sulem; Daniel F Gudbjartsson; Gisli Masson; Bjarni A Agnarsson; Kristrun R Benediktsdottir; Asgeir Sigurdsson; Olafur Th Magnusson; Sigurjon A Gudjonsson; Droplaug N Magnusdottir; Hrefna Johannsdottir; Hafdis Th Helgadottir; Simon N Stacey; Adalbjorg Jonasdottir; Stefania B Olafsdottir; Gudmar Thorleifsson; Jon G Jonasson; Laufey Tryggvadottir; Sebastian Navarrete; Fernando Fuertes; Brian T Helfand; Qiaoyan Hu; Irma E Csiki; Ioan N Mates; Viorel Jinga; Katja K H Aben; Inge M van Oort; Sita H Vermeulen; Jenny L Donovan; Freddy C Hamdy; Chi-Fai Ng; Peter K F Chiu; Kin-Mang Lau; Maggie C Y Ng; Jeffrey R Gulcher; Augustine Kong; William J Catalona; Jose I Mayordomo; Gudmundur V Einarsson; Rosa B Barkardottir; Eirikur Jonsson; Dana Mates; David E Neal; Lambertus A Kiemeney; Unnur Thorsteinsdottir; Thorunn Rafnar; Kari Stefansson
Journal:  Nat Genet       Date:  2012-10-28       Impact factor: 38.330

4.  FunciSNP: an R/bioconductor tool integrating functional non-coding data sets with genetic association studies to identify candidate regulatory SNPs.

Authors:  Simon G Coetzee; Suhn K Rhie; Benjamin P Berman; Gerhard A Coetzee; Houtan Noushmehr
Journal:  Nucleic Acids Res       Date:  2012-06-08       Impact factor: 16.971

5.  Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression.

Authors:  John R Prensner; Matthew K Iyer; O Alejandro Balbin; Saravana M Dhanasekaran; Qi Cao; J Chad Brenner; Bharathi Laxman; Irfan A Asangani; Catherine S Grasso; Hal D Kominsky; Xuhong Cao; Xiaojun Jing; Xiaoju Wang; Javed Siddiqui; John T Wei; Daniel Robinson; Hari K Iyer; Nallasivam Palanisamy; Christopher A Maher; Arul M Chinnaiyan
Journal:  Nat Biotechnol       Date:  2011-07-31       Impact factor: 54.908

6.  An enhancer from the 8q24 prostate cancer risk region is sufficient to direct reporter gene expression to a subset of prostate stem-like epithelial cells in transgenic mice.

Authors:  Man-Chun Ting; Chun-Peng Liao; Chunli Yan; Li Jia; Susan Groshen; Baruch Frenkel; Pradip Roy-Burman; Gerhard A Coetzee; Robert Maxson
Journal:  Dis Model Mech       Date:  2012-01-25       Impact factor: 5.758

7.  Functional enhancers at the gene-poor 8q24 cancer-linked locus.

Authors:  Li Jia; Gilad Landan; Mark Pomerantz; Rami Jaschek; Paula Herman; David Reich; Chunli Yan; Omar Khalid; Phil Kantoff; William Oh; J Robert Manak; Benjamin P Berman; Brian E Henderson; Baruch Frenkel; Christopher A Haiman; Matthew Freedman; Amos Tanay; Gerhard A Coetzee
Journal:  PLoS Genet       Date:  2009-08-14       Impact factor: 5.917

8.  Reprogramming transcription by distinct classes of enhancers functionally defined by eRNA.

Authors:  Dong Wang; Ivan Garcia-Bassets; Chris Benner; Wenbo Li; Xue Su; Yiming Zhou; Jinsong Qiu; Wen Liu; Minna U Kaikkonen; Kenneth A Ohgi; Christopher K Glass; Michael G Rosenfeld; Xiang-Dong Fu
Journal:  Nature       Date:  2011-05-15       Impact factor: 49.962

9.  Oct4 targets regulatory nodes to modulate stem cell function.

Authors:  Pearl A Campbell; Carolina Perez-Iratxeta; Miguel A Andrade-Navarro; Michael A Rudnicki
Journal:  PLoS One       Date:  2007-06-20       Impact factor: 3.240

  9 in total
  14 in total

1.  Heritability of prostate cancer: a tale of rare variants and common single nucleotide polymorphisms.

Authors:  Xifeng Wu; Jian Gu
Journal:  Ann Transl Med       Date:  2016-05

2.  Gene regulatory mechanisms underpinning prostate cancer susceptibility.

Authors:  Thomas Whitington; Ping Gao; Wei Song; Helen Ross-Adams; Alastair D Lamb; Yuehong Yang; Ilaria Svezia; Daniel Klevebring; Ian G Mills; Robert Karlsson; Silvia Halim; Mark J Dunning; Lars Egevad; Anne Y Warren; David E Neal; Henrik Grönberg; Johan Lindberg; Gong-Hong Wei; Fredrik Wiklund
Journal:  Nat Genet       Date:  2016-03-07       Impact factor: 38.330

3.  Variants on 8q24 and prostate cancer risk in Chinese population: a meta-analysis.

Authors:  Xiao-Qiang Ren; Jian-Guo Zhang; Shi-Yong Xin; Tao Cheng; Liang Li; Wei-Hua Ren
Journal:  Int J Clin Exp Med       Date:  2015-06-15

4.  Genome-wide association of familial prostate cancer cases identifies evidence for a rare segregating haplotype at 8q24.21.

Authors:  Craig C Teerlink; Daniel Leongamornlert; Tokhir Dadaev; Alun Thomas; James Farnham; Robert A Stephenson; Shaun Riska; Shannon K McDonnell; Daniel J Schaid; William J Catalona; S Lilly Zheng; Kathleen A Cooney; Anna M Ray; Kimberly A Zuhlke; Ethan M Lange; Graham G Giles; Melissa C Southey; Liesel M Fitzgerald; Antje Rinckleb; Manuel Luedeke; Christiane Maier; Janet L Stanford; Elaine A Ostrander; Elina M Kaikkonen; Csilla Sipeky; Teuvo Tammela; Johanna Schleutker; Kathleen E Wiley; Sarah D Isaacs; Patrick C Walsh; William B Isaacs; Jianfeng Xu; Geraldine Cancel-Tassin; Olivier Cussenot; Diptasri Mandal; Cecelia Laurie; Cathy Laurie; Stephen N Thibodeau; Rosalind A Eeles; Zsofia Kote-Jarai; Lisa Cannon-Albright
Journal:  Hum Genet       Date:  2016-06-04       Impact factor: 4.132

5.  The contribution of rare variation to prostate cancer heritability.

Authors:  Nicholas Mancuso; Nadin Rohland; Kristin A Rand; Arti Tandon; Alexander Allen; Dominique Quinque; Swapan Mallick; Heng Li; Alex Stram; Xin Sheng; Zsofia Kote-Jarai; Douglas F Easton; Rosalind A Eeles; Loic Le Marchand; Alex Lubwama; Daniel Stram; Stephen Watya; David V Conti; Brian Henderson; Christopher A Haiman; Bogdan Pasaniuc; David Reich
Journal:  Nat Genet       Date:  2015-11-16       Impact factor: 38.330

6.  Whole-exome sequencing of over 4100 men of African ancestry and prostate cancer risk.

Authors:  Kristin A Rand; Nadin Rohland; Arti Tandon; Alex Stram; Xin Sheng; Ron Do; Bogdan Pasaniuc; Alex Allen; Dominique Quinque; Swapan Mallick; Loic Le Marchand; Sam Kaggwa; Alex Lubwama; Daniel O Stram; Stephen Watya; Brian E Henderson; David V Conti; David Reich; Christopher A Haiman
Journal:  Hum Mol Genet       Date:  2015-11-24       Impact factor: 6.150

Review 7.  Candidate gene association studies: a comprehensive guide to useful in silico tools.

Authors:  Radhika Patnala; Judith Clements; Jyotsna Batra
Journal:  BMC Genet       Date:  2013-05-09       Impact factor: 2.797

8.  Current perspectives on FOXA1 regulation of androgen receptor signaling and prostate cancer.

Authors:  Yeqing Angela Yang; Jindan Yu
Journal:  Genes Dis       Date:  2015-06

9.  Atlas of prostate cancer heritability in European and African-American men pinpoints tissue-specific regulation.

Authors:  Alexander Gusev; Huwenbo Shi; Gleb Kichaev; Mark Pomerantz; Fugen Li; Henry W Long; Sue A Ingles; Rick A Kittles; Sara S Strom; Benjamin A Rybicki; Barbara Nemesure; William B Isaacs; Wei Zheng; Curtis A Pettaway; Edward D Yeboah; Yao Tettey; Richard B Biritwum; Andrew A Adjei; Evelyn Tay; Ann Truelove; Shelley Niwa; Anand P Chokkalingam; Esther M John; Adam B Murphy; Lisa B Signorello; John Carpten; M Cristina Leske; Suh-Yuh Wu; Anslem J M Hennis; Christine Neslund-Dudas; Ann W Hsing; Lisa Chu; Phyllis J Goodman; Eric A Klein; John S Witte; Graham Casey; Sam Kaggwa; Michael B Cook; Daniel O Stram; William J Blot; Rosalind A Eeles; Douglas Easton; Zsofia Kote-Jarai; Ali Amin Al Olama; Sara Benlloch; Kenneth Muir; Graham G Giles; Melissa C Southey; Liesel M Fitzgerald; Henrik Gronberg; Fredrik Wiklund; Markus Aly; Brian E Henderson; Johanna Schleutker; Tiina Wahlfors; Teuvo L J Tammela; Børge G Nordestgaard; Tim J Key; Ruth C Travis; David E Neal; Jenny L Donovan; Freddie C Hamdy; Paul Pharoah; Nora Pashayan; Kay-Tee Khaw; Janet L Stanford; Stephen N Thibodeau; Shannon K McDonnell; Daniel J Schaid; Christiane Maier; Walther Vogel; Manuel Luedeke; Kathleen Herkommer; Adam S Kibel; Cezary Cybulski; Dominika Wokolorczyk; Wojciech Kluzniak; Lisa Cannon-Albright; Craig Teerlink; Hermann Brenner; Aida K Dieffenbach; Volker Arndt; Jong Y Park; Thomas A Sellers; Hui-Yi Lin; Chavdar Slavov; Radka Kaneva; Vanio Mitev; Jyotsna Batra; Amanda Spurdle; Judith A Clements; Manuel R Teixeira; Hardev Pandha; Agnieszka Michael; Paula Paulo; Sofia Maia; Andrzej Kierzek; David V Conti; Demetrius Albanes; Christine Berg; Sonja I Berndt; Daniele Campa; E David Crawford; W Ryan Diver; Susan M Gapstur; J Michael Gaziano; Edward Giovannucci; Robert Hoover; David J Hunter; Mattias Johansson; Peter Kraft; Loic Le Marchand; Sara Lindström; Carmen Navarro; Kim Overvad; Elio Riboli; Afshan Siddiq; Victoria L Stevens; Dimitrios Trichopoulos; Paolo Vineis; Meredith Yeager; Gosia Trynka; Soumya Raychaudhuri; Frederick R Schumacher; Alkes L Price; Matthew L Freedman; Christopher A Haiman; Bogdan Pasaniuc
Journal:  Nat Commun       Date:  2016-04-07       Impact factor: 14.919

10.  Comprehensive functional annotation of 77 prostate cancer risk loci.

Authors:  Dennis J Hazelett; Suhn Kyong Rhie; Malaina Gaddis; Chunli Yan; Daniel L Lakeland; Simon G Coetzee; Brian E Henderson; Houtan Noushmehr; Wendy Cozen; Zsofia Kote-Jarai; Rosalind A Eeles; Douglas F Easton; Christopher A Haiman; Wange Lu; Peggy J Farnham; Gerhard A Coetzee
Journal:  PLoS Genet       Date:  2014-01-30       Impact factor: 5.917

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