Literature DB >> 23249749

MicroRNA-182-5p targets a network of genes involved in DNA repair.

Keerthana Krishnan1, Anita L Steptoe, Hilary C Martin, Shivangi Wani, Katia Nones, Nic Waddell, Mythily Mariasegaram, Peter T Simpson, Sunil R Lakhani, Brian Gabrielli, Alexander Vlassov, Nicole Cloonan, Sean M Grimmond.   

Abstract

MicroRNAs are noncoding regulators of gene expression, which act by repressing protein translation and/or degrading mRNA. Many have been shown to drive tumorigenesis in cancer, but functional studies to understand their mode of action are typically limited to single-target genes. In this study, we use synthetic biotinylated miRNA to pull down endogenous targets of miR-182-5p. We identified more than 1000 genes as potential targets of miR-182-5p, most of which have a known function in pathways underlying tumor biology. Specifically, functional enrichment analysis identified components of both the DNA damage response pathway and cell cycle to be highly represented in this target cohort. Experimental validation confirmed that miR-182-5p-mediated disruption of the homologous recombination (HR) pathway is a consequence of its ability to target multiple components in that pathway. Although there is a strong enrichment for the cell cycle ontology, we do not see primary proliferative defects as a consequence of miR-182-5p overexpression. We highlight targets that could be responsible for miR-182-5p-mediated disruption of other biological processes attributed in the literature so far. Finally, we show that miR-182-5p is highly expressed in a panel of human breast cancer samples, highlighting its role as a potential oncomir in breast cancer.

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Year:  2012        PMID: 23249749      PMCID: PMC3543090          DOI: 10.1261/rna.034926.112

Source DB:  PubMed          Journal:  RNA        ISSN: 1355-8382            Impact factor:   4.942


  74 in total

1.  Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets.

Authors:  Benjamin P Lewis; Christopher B Burge; David P Bartel
Journal:  Cell       Date:  2005-01-14       Impact factor: 41.582

2.  miR-34a, miR-29c and miR-17-5p are downregulated in CLL patients with TP53 abnormalities.

Authors:  M Mraz; K Malinova; J Kotaskova; S Pavlova; B Tichy; J Malcikova; K Stano Kozubik; J Smardova; Y Brychtova; M Doubek; M Trbusek; J Mayer; S Pospisilova
Journal:  Leukemia       Date:  2009-01-22       Impact factor: 11.528

3.  Promoting apoptosis: a novel activity associated with the cyclin-dependent kinase inhibitor p27.

Authors:  Y Katayose; M Kim; A N Rakkar; Z Li; K H Cowan; P Seth
Journal:  Cancer Res       Date:  1997-12-15       Impact factor: 12.701

4.  Genome-wide dissection of microRNA functions and cotargeting networks using gene set signatures.

Authors:  John S Tsang; Margaret S Ebert; Alexander van Oudenaarden
Journal:  Mol Cell       Date:  2010-04-09       Impact factor: 17.970

5.  A microRNA polycistron as a potential human oncogene.

Authors:  Lin He; J Michael Thomson; Michael T Hemann; Eva Hernando-Monge; David Mu; Summer Goodson; Scott Powers; Carlos Cordon-Cardo; Scott W Lowe; Gregory J Hannon; Scott M Hammond
Journal:  Nature       Date:  2005-06-09       Impact factor: 49.962

6.  Programmed cell death 4 (PDCD4) is an important functional target of the microRNA miR-21 in breast cancer cells.

Authors:  Lisa B Frankel; Nanna R Christoffersen; Anders Jacobsen; Morten Lindow; Anders Krogh; Anders H Lund
Journal:  J Biol Chem       Date:  2007-11-08       Impact factor: 5.157

7.  MicroRNA-21 targets tumor suppressor genes in invasion and metastasis.

Authors:  Shuomin Zhu; Hailong Wu; Fangting Wu; Daotai Nie; Shijie Sheng; Yin-Yuan Mo
Journal:  Cell Res       Date:  2008-03       Impact factor: 25.617

8.  p27Kip1 stabilization is essential for the maintenance of cell cycle arrest in response to DNA damage.

Authors:  Myriam Cuadrado; Paula Gutierrez-Martinez; Aneta Swat; Angel R Nebreda; Oscar Fernandez-Capetillo
Journal:  Cancer Res       Date:  2009-10-20       Impact factor: 12.701

9.  MicroRNA-21 targets the tumor suppressor gene tropomyosin 1 (TPM1).

Authors:  Shuomin Zhu; Min-Liang Si; Hailong Wu; Yin-Yuan Mo
Journal:  J Biol Chem       Date:  2007-03-15       Impact factor: 5.157

10.  miR-205 Exerts tumor-suppressive functions in human prostate through down-regulation of protein kinase Cepsilon.

Authors:  Paolo Gandellini; Marco Folini; Nicole Longoni; Marzia Pennati; Mara Binda; Maurizio Colecchia; Roberto Salvioni; Rosanna Supino; Roberta Moretti; Patrizia Limonta; Riccardo Valdagni; Maria Grazia Daidone; Nadia Zaffaroni
Journal:  Cancer Res       Date:  2009-02-24       Impact factor: 12.701

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  57 in total

1.  Investigation of microRNA expression and DNA repair gene transcripts in human oocytes and blastocysts.

Authors:  P Tulay; R P Naja; O Cascales-Roman; A Doshi; P Serhal; S B SenGupta
Journal:  J Assist Reprod Genet       Date:  2015-10-05       Impact factor: 3.412

Review 2.  microRNAs in cancer cell response to ionizing radiation.

Authors:  Jennifer R Czochor; Peter M Glazer
Journal:  Antioxid Redox Signal       Date:  2014-02-04       Impact factor: 8.401

3.  Transcriptional and post-transcriptional upregulation of p27 mediates growth inhibition of isorhapontigenin (ISO) on human bladder cancer cells.

Authors:  Guosong Jiang; Chao Huang; Jingxia Li; Haishan Huang; Jingjing Wang; Yawei Li; Fei Xie; Honglei Jin; Junlan Zhu; Chuanshu Huang
Journal:  Carcinogenesis       Date:  2018-03-08       Impact factor: 4.944

Review 4.  A network-biology perspective of microRNA function and dysfunction in cancer.

Authors:  Cameron P Bracken; Hamish S Scott; Gregory J Goodall
Journal:  Nat Rev Genet       Date:  2016-10-31       Impact factor: 53.242

5.  Oxidative stress-induced miRNAs modulate AKT signaling and promote cellular senescence in uterine leiomyoma.

Authors:  Xiuhua Xu; J Julie Kim; Yinuo Li; Jia Xie; Changshun Shao; Jian-Jun Wei
Journal:  J Mol Med (Berl)       Date:  2018-08-10       Impact factor: 4.599

Review 6.  DNA damage-associated biomarkers in studying individual sensitivity to low-dose radiation from cardiovascular imaging.

Authors:  Won Hee Lee; Patricia K Nguyen; Dominik Fleischmann; Joseph C Wu
Journal:  Eur Heart J       Date:  2016-06-05       Impact factor: 29.983

7.  MicroRNA-140 impedes DNA repair by targeting FEN1 and enhances chemotherapeutic response in breast cancer.

Authors:  Xiao Lu; Rui Liu; Meina Wang; Alagamuthu Karthick Kumar; Feiyan Pan; Lingfeng He; Zhigang Hu; Zhigang Guo
Journal:  Oncogene       Date:  2019-08-30       Impact factor: 9.867

8.  Triple-negative and luminal A breast tumors: differential expression of miR-18a-5p, miR-17-5p, and miR-20a-5p.

Authors:  Carlos Marino Cabral Calvano Filho; Daniele Carvalho Calvano-Mendes; Kátia Cândido Carvalho; Gustavo Arantes Maciel; Marcos Desidério Ricci; Ana Paula Torres; José Roberto Filassi; Edmund Chada Baracat
Journal:  Tumour Biol       Date:  2014-05-09

Review 9.  Non-coding RNAs in DNA damage and repair.

Authors:  Vivek Sharma; Tom Misteli
Journal:  FEBS Lett       Date:  2013-05-16       Impact factor: 4.124

10.  RBP-J-Regulated miR-182 Promotes TNF-α-Induced Osteoclastogenesis.

Authors:  Christine H Miller; Sinead M Smith; Mahmoud Elguindy; Tuo Zhang; Jenny Z Xiang; Xiaoyu Hu; Lionel B Ivashkiv; Baohong Zhao
Journal:  J Immunol       Date:  2016-05-09       Impact factor: 5.422

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