Literature DB >> 23249056

Nonlinear dimensionality reduction for nonadiabatic dynamics: the influence of conical intersection topography on population transfer rates.

Aaron M Virshup1, Jiahao Chen, Todd J Martínez.   

Abstract

Conical intersections play a critical role in the nonadiabatic relaxation of excited electronic states. However, there are an infinite number of these intersections and it is difficult to predict which are actually relevant. Furthermore, traditional descriptors such as intrinsic reaction coordinates and steepest descent paths often fail to adequately characterize excited state reactions due to their highly nonequilibrium nature. To address these deficiencies in the characterization of excited state mechanisms, we apply a nonlinear dimensionality reduction scheme (diffusion mapping) to generate reaction coordinates directly from ab initio multiple spawning dynamics calculations. As illustrated with various examples of photoisomerization dynamics, excited state reaction pathways can be derived directly from simulation data without any a priori specification of relevant coordinates. Furthermore, diffusion maps also reveal the influence of intersection topography on the efficiency of electronic population transfer, providing further evidence that peaked intersections promote nonadiabatic transitions more effectively than sloped intersections. Our results demonstrate the usefulness of nonlinear dimensionality reduction techniques as powerful tools for elucidating reaction mechanisms beyond the statistical description of processes on ground state potential energy surfaces.

Year:  2012        PMID: 23249056     DOI: 10.1063/1.4742066

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  4 in total

1.  Assessment of Density Functional Methods for Obtaining Geometries at Conical Intersections in Organic Molecules.

Authors:  Michael Filatov
Journal:  J Chem Theory Comput       Date:  2013-09-06       Impact factor: 6.006

2.  Direct Learning Hidden Excited State Interaction Patterns from ab initio Dynamics and Its Implication as Alternative Molecular Mechanism Models.

Authors:  Fang Liu; Likai Du; Dongju Zhang; Jun Gao
Journal:  Sci Rep       Date:  2017-08-18       Impact factor: 4.379

3.  Geometric and electronic structure probed along the isomerisation coordinate of a photoactive yellow protein chromophore.

Authors:  Cate S Anstöter; Basile F E Curchod; Jan R R Verlet
Journal:  Nat Commun       Date:  2020-06-04       Impact factor: 14.919

4.  Analyzing Grid-Based Direct Quantum Molecular Dynamics Using Non-Linear Dimensionality Reduction.

Authors:  Gareth W Richings; Scott Habershon
Journal:  Molecules       Date:  2021-12-07       Impact factor: 4.411

  4 in total

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