| Literature DB >> 23248734 |
M Torres1, L Fraile, Jm Echevarria, B Hernandez Novoa, M Ortiz.
Abstract
A large number of assays designed for genotyping human papillomaviruses (HPV) have been developed in the last years. They perform within a wide range of analytical sensitivity and specificity values for the different viral types, and are used either for diagnosis, epidemiological studies, evaluation of vaccines and implementing and monitoring of vaccination programs. Methods for specific genotyping of HPV-16 and HPV-18 are also useful for the prevention of cervical cancer in screening programs. Some commercial tests are, in addition, fully or partially automated. Automation of HPV genotyping presents advantages such as the simplicity of the testing procedure for the operator, the ability to process a large number of samples in a short time, and the reduction of human errors from manual operations, allowing a better quality assurance and a reduction of cost. The present review collects information about the current HPV genotyping tests, with special attention to practical aspects influencing their use in clinical laboratories.Entities:
Keywords: Automation; Human Papillomavirus; genotyping.
Year: 2012 PMID: 23248734 PMCID: PMC3522087 DOI: 10.2174/1874357901206010144
Source DB: PubMed Journal: Open Virol J ISSN: 1874-3579
Characteristics and Analytical Sensitivity of the Main HR-HPV Screening Assays with Reflex or Concurrent HPV-16 and HPV-18 Genotyping and HPV Genotyping Assays
| HPV Assay | Technology | Automation | Analytical Sensitivity |
|---|---|---|---|
| Cobas 4800 HPV Test | Real time PCR | Fully automated high-throughput | 80-2,400 copies/ml |
| Cervista HPV 16/18 Test | Invader® chemistry | Automation available | 625-1,250 copies/reaction |
| RealTime High Risk HPV test (Abbott | Real time PCR | Fully automated high-throughput | 500-5,000 copies/assay |
| HR-HPV 16/18/45 Probe Set Test | Hybrid Capture | Automation available | 5,000 copies/assay |
| INNO-LiPA HPV Genotyping Extra | Reverse hybridisation | Partially automated
DNA extraction Hybridization/Detection Interpretation | 20-70 copies/assay |
| Linear Array HPV Genotyping Test | Reverse hybridisation | Partially automated
DNA extraction Hybridization/Detection | 50-8,000 copies/ml |
| PapilloCheck HPV-Screening Test | PCR-microarray | Partially automated
DNA extraction Interpretation | 30-750 copies/reaction |
| Clart HPV 2 (Genomica) | PCR-microarray | Partially automated
DNA extraction: Detection/Interpretation | 10-100 copies/reaction |
| Infiniti HPV Genotyping assay | PCR-microarray | Fully automated: Infiniti analyzer | 300-3,000/assay |
Conformité Européenne (CE marked);
U.S Food and Drug Administration approval.
HPV Genotypes Detected by HR-HPV Screening Tests with Reflex or Concurrent HPV-16 and HPV-18 Genotyping and by Tests Intended for HPV Genotyping
| Oncogenic Risk | HPV TYPES | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Cobas 4800 HPV Test | X | X | X | X | X | X | X | X | X | X | X | X | X | X | |||
| Cervista HPV 16/18 Test | X | X | |||||||||||||||
| RealTime High Risk HPV test | X | X | X | X | X | X | X | X | X | X | X | X | X | X | |||
| HR-HPV 16/18/45 Probe Set Test | X | X | X | ||||||||||||||
| INNO-LiPA HPV Genotyping Extra | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
| Linear Array HPV Genotyping Test | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
| PapilloCheck® Test Kit | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | |
| Clart® Papillomavirus Humano 2 | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
| Infiniti HPV QUAD | X | X | X | X | X | X | X | X | X | X | X | X | X | ||||
| Infiniti HR-HPV QUAD | X | X | X | X | X | X | X | X | X | X | X | X | X | X | |||
| Infiniti HPV genotyping | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X | X |
| Cobas 4800 HPV Test | |||||||||||||||||
| Cervista HPV 16/18 Test | |||||||||||||||||
| RealTime High Risk HPV test | |||||||||||||||||
| HR-HPV 16/18/45 Probe Set Test | |||||||||||||||||
| INNO-LiPA HPV Genotyping Extra | X | X | X | X | X | X | X | ||||||||||
| Linear Array HPV Genotyping Test | X | X | X | X | X | X | X | X | X | ||||||||
| PapilloCheck® Test Kit | X | X | X | X | X | X | X | ||||||||||
| Clart® Papillomavirus Humano 2 | X | X | X | X | X | X | X | X | X | X | X | X | |||||
| Infiniti HPV QUAD | X | X | |||||||||||||||
| Infiniti HR-HPV QUAD | |||||||||||||||||
| Infiniti HPV genotyping | X | X | X | ||||||||||||||
| Cobas 4800 HPV Test | |||||||||||||||||
| Cervista HPV 16/18 Test | |||||||||||||||||
| RealTime High Risk HPV test | |||||||||||||||||
| HR-HPV 16/18/45 Probe Set Test | |||||||||||||||||
| INNO-LiPA HPV Genotyping Extra | X | X | X | X | |||||||||||||
| Linear Array HPV Genotyping Test | X | X | X | X | X | X | X | X | X | ||||||||
| PapilloCheck® Test Kit | X | X | |||||||||||||||
| Clart® Papillomavirus Humano 2 | X | X | X | X | X | X | |||||||||||
| Infiniti HPV QUAD | |||||||||||||||||
| Infiniti HR-HPV QUAD | |||||||||||||||||
| Infiniti HPV genotyping | X | X | X | X | X | X | |||||||||||
Oncogenic risk classification of HPV genotypes was establish according to 2009 IARC Monograph Working Group [7].