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Literature DB >> 23246806

C-curve: a novel 3D graphical representation of DNA sequence based on codons.

Abstract

In this paper, a novel 3D graphical representation of DNA sequence based on codons is proposed. Since there is not loss of information due to overlapping and containing loops, this representation will be useful for comparison of different DNA sequences. This 3D curve will be convenient for DNA mutations comparison specially. In continues we give a numerical characterization of DNA sequences based on the new 3D curve. This characterization facilitates quantitative comparisons of similarities/dissimilarities analysis of DNA sequences based on codons.

Mesh：

Substances：
Codon
Globins

Year: 2012 PMID： 23246806 DOI： 10.1016/j.mbs.2012.11.009

Source DB: PubMed Journal: Math Biosci ISSN： 0025-5564 Impact factor: 2.144

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Cited

7 in total

C-curve: a novel 3D graphical representation of DNA sequence based on codons.

1. Similarity evaluation of DNA sequences based on frequent patterns and entropy.

2. Effective Encoding for DNA Sequence Visualization Based on Nucleotide's Ring Structure.

3. 3D-dynamic representation of DNA sequences.

4. Circular Helix-Like Curve: An Effective Tool of Biological Sequence Analysis and Comparison.

5. Study of biological networks using graph theory.

6. A new method to analyze protein sequence similarity using Dynamic Time Warping.

7. One novel representation of DNA sequence based on the global and local position information.