Literature DB >> 23246776

Parameter sensitivity analysis of stochastic models: application to catalytic reaction networks.

Chiara Damiani1, Alessandro Filisetti, Alex Graudenzi, Paola Lecca.   

Abstract

A general numerical methodology for parametric sensitivity analysis is proposed, which allows to determine the parameters exerting the greatest influence on the output of a stochastic computational model, especially when the knowledge about the actual value of a parameter is insufficient. An application of the procedure is performed on a model of protocell, in order to detect the kinetic rates mainly affecting the capability of a catalytic reaction network enclosed in a semi-permeable membrane to retain material from its environment and to generate a variety of molecular species within its boundaries. It is shown that the former capability is scarcely sensitive to variations in the model parameters, whereas a kinetic rate responsible for profound modifications of the latter can be identified and it depends on the specific reaction network. A faster uptaking of limited resources from the environment may have represented a significant advantage from an evolutionary point of view and this result is a first indication in order to decipher which kind of structures are more suitable to achieve a viable evolution.
Copyright © 2012 Elsevier Ltd. All rights reserved.

Mesh:

Year:  2012        PMID: 23246776     DOI: 10.1016/j.compbiolchem.2012.10.007

Source DB:  PubMed          Journal:  Comput Biol Chem        ISSN: 1476-9271            Impact factor:   2.877


  4 in total

Review 1.  Computational strategies for a system-level understanding of metabolism.

Authors:  Paolo Cazzaniga; Chiara Damiani; Daniela Besozzi; Riccardo Colombo; Marco S Nobile; Daniela Gaglio; Dario Pescini; Sara Molinari; Giancarlo Mauri; Lilia Alberghina; Marco Vanoni
Journal:  Metabolites       Date:  2014-11-24

2.  Spatio-temporal modelling of Leishmania infantum infection among domestic dogs: a simulation study and sensitivity analysis applied to rural Brazil.

Authors:  Elizabeth Buckingham-Jeffery; Edward M Hill; Samik Datta; Erin Dilger; Orin Courtenay
Journal:  Parasit Vectors       Date:  2019-05-07       Impact factor: 3.876

3.  Gene Expression Landscape of Chronic Myeloid Leukemia K562 Cells Overexpressing the Tumor Suppressor Gene PTPRG.

Authors:  Giulia Lombardi; Roberta Valeria Latorre; Alessandro Mosca; Diego Calvanese; Luisa Tomasello; Christian Boni; Manuela Ferracin; Massimo Negrini; Nader Al Dewik; Mohamed Yassin; Mohamed A Ismail; Bruno Carpentieri; Claudio Sorio; Paola Lecca
Journal:  Int J Mol Sci       Date:  2022-08-31       Impact factor: 6.208

4.  Using sensitivity analysis to identify key factors for the propagation of a plant epidemic.

Authors:  Loup Rimbaud; Claude Bruchou; Sylvie Dallot; David R J Pleydell; Emmanuel Jacquot; Samuel Soubeyrand; Gaël Thébaud
Journal:  R Soc Open Sci       Date:  2018-01-17       Impact factor: 2.963

  4 in total

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