Literature DB >> 23242653

DRE-binding transcription factor gene (LlaDREB1b) is regulated by various abiotic stresses in Lepidium latifolium L.

Sanjay Mohan Gupta1, Pankaj Pandey, P S Negi, V Pande, Atul Grover, Vikas Y Patade, Zakwan Ahmed.   

Abstract

We have isolated and in silico characterized a cold-induced LlaDREB1b encoding a putative DRE-binding transcription factor from Lepidium latifolium. Its cDNA (JN214345) sequence (998 bp) consisted of a 642 bp ORF, 168 and 188 bp of 5' and 3' UTR regions, respectively, encoding a protein of 213 aa with deduced molecular mass 23.85 kDa and pI of 4.63. In silico and phylogenetic analysis further suggested that the protein showed features of a typical member of the AP2/EREBP family of DNA-binding proteins. Southern blot analysis indicated that multiple copies of the gene could be present in the genome. Its transcripts were abundant in leaves, petiole and stem, but scarce in roots and could strongly be induced by cold treatment (4 °C), weakly by drought and salt stress, and did not respond to ABA treatment. Thus, LlaDREB1b is a potential candidate for abiotic stress-tolerance engineering in crop plants upon its further functional validation.

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Year:  2012        PMID: 23242653     DOI: 10.1007/s11033-012-2343-z

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  29 in total

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2.  The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration.

Authors:  J Medina; M Bargues; J Terol; M Pérez-Alonso; J Salinas
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3.  Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression.

Authors:  S J Gilmour; D G Zarka; E J Stockinger; M P Salazar; J M Houghton; M F Thomashow
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4.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

Review 5.  AP2/ERF family transcription factors in plant abiotic stress responses.

Authors:  Junya Mizoi; Kazuo Shinozaki; Kazuko Yamaguchi-Shinozaki
Journal:  Biochim Biophys Acta       Date:  2011-08-16

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7.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

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8.  Soybean DRE-binding transcription factors that are responsive to abiotic stresses.

Authors:  Xue-Ping Li; Ai-Guo Tian; Guang-Zuo Luo; Zhi-Zhong Gong; Jin-Song Zhang; Shou-Yi Chen
Journal:  Theor Appl Genet       Date:  2005-04-20       Impact factor: 5.699

9.  Isolation and identification of a cold-inducible gene encoding a putative DRE-binding transcription factor from Festuca arundinacea.

Authors:  Mingjuan Tang; Shiyou Lü; Yuxiang Jing; Xiangjuan Zhou; Jingwen Sun; Shihua Shen
Journal:  Plant Physiol Biochem       Date:  2005-02-19       Impact factor: 4.270

10.  An EREBP/AP2-type protein in Triticum aestivum was a DRE-binding transcription factor induced by cold, dehydration and ABA stress.

Authors:  Y-G Shen; W-K Zhang; S-J He; J-S Zhang; Q Liu; S-Y Chen
Journal:  Theor Appl Genet       Date:  2002-11-15       Impact factor: 5.699

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  4 in total

Review 1.  Systems Biology for Smart Crops and Agricultural Innovation: Filling the Gaps between Genotype and Phenotype for Complex Traits Linked with Robust Agricultural Productivity and Sustainability.

Authors:  Anil Kumar; Rajesh Kumar Pathak; Sanjay Mohan Gupta; Vikram Singh Gaur; Dinesh Pandey
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2.  Cloning and characterization of GPAT gene from Lepidium latifolium L.: a step towards translational research in agri-genomics for food and fuel.

Authors:  Sanjay Mohan Gupta; Pankaj Pandey; Atul Grover; Vikas Yadav Patade; Sadhana Singh; Zakwan Ahmed
Journal:  Mol Biol Rep       Date:  2013-05-04       Impact factor: 2.316

3.  Semi-quantitative analysis of transcript accumulation in response to drought stress by Lepidium latifolium seedlings.

Authors:  Sanjay Mohan Gupta; Sadhana Singh; Pankaj Pandey; Atul Grover; Zakwan Ahmed
Journal:  Plant Signal Behav       Date:  2013-06-24

4.  Evaluation of nutritional and antioxidant status of Lepidium latifolium Linn.: a novel phytofood from Ladakh.

Authors:  Tarandeep Kaur; Khadim Hussain; Sushma Koul; Ram Vishwakarma; Dhiraj Vyas
Journal:  PLoS One       Date:  2013-08-02       Impact factor: 3.240

  4 in total

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